chore(deps): bump actions/checkout from 4 to 6

.github/workflows/CI.yml

@@ -47,7 +47,7 @@ jobs:
             test-id: include
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: "Set up Julia"
         uses: julia-actions/setup-julia@v2
         with:
@@ -100,7 +100,7 @@ jobs:
             python-version: '3.10'
             julia-version: '1.10'
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
       - name: "Install PySR"
         run: |
@@ -120,7 +120,7 @@ jobs:
         os: ['ubuntu-latest']
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: "Cache conda"
         uses: actions/cache@v4
         env:
@@ -163,7 +163,7 @@ jobs:
         os: ['ubuntu-latest']
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: "Set up Python"
         uses: actions/setup-python@v6
         with:
@@ -193,7 +193,7 @@ jobs:
         python-version: ['3']
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: "Set up Python"
         uses: actions/setup-python@v6
         with:
@@ -218,7 +218,7 @@ jobs:
         julia-version: ['1']
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: "Set up Julia"
         uses: julia-actions/setup-julia@v2
         with:
@@ -247,7 +247,7 @@ jobs:
         shell: bash -l {0}
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
           python-version: ${{ matrix.python-version }}

.github/workflows/CI_Windows.yml

@@ -28,7 +28,7 @@ jobs:
         os: [windows-latest]
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: "Set up Julia"
         uses: julia-actions/setup-julia@v2
         with:

.github/workflows/CI_apptainer.yml

@@ -26,7 +26,7 @@ jobs:
         os: [ubuntu-latest]
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: eWaterCycle/setup-apptainer@v2
         with:
             apptainer-version: 1.3.0

.github/workflows/CI_docker.yml

@@ -27,7 +27,7 @@ jobs:
         arch: ['linux/amd64']
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: Build docker
         run: docker build --platform=${{ matrix.arch }} -t pysr .
       - name: Test docker

.github/workflows/CI_docker_large_nightly.yml

@@ -25,7 +25,7 @@ jobs:
 
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: Set up QEMU
         uses: docker/setup-qemu-action@v3
         with:

.github/workflows/CI_large_nightly.yml

@@ -28,7 +28,7 @@ jobs:
         os: [ubuntu-latest, macos-latest, windows-latest]
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: "Set up Julia"
         uses: julia-actions/setup-julia@v2
         with:

.github/workflows/CI_mac.yml

@@ -28,7 +28,7 @@ jobs:
         os: [macos-latest]
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: "Set up Julia"
         uses: julia-actions/setup-julia@v2
         with:

.github/workflows/codeql-analysis.yml

@@ -27,7 +27,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v5
+      uses: actions/checkout@v6
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL

.github/workflows/docker_deploy.yml

@@ -22,7 +22,7 @@ jobs:
         julia-version: [1.10.3]
     steps:
       - name: Checkout
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Login to Docker Hub
         uses: docker/login-action@v3
         if: github.event_name != 'pull_request'

.github/workflows/docs.yml

@@ -32,7 +32,7 @@ jobs:
       matrix:
         target: [primary, secondary]
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: actions/setup-node@v4
         with:
           node-version: 22

.github/workflows/pypi_deploy.yml

@@ -15,7 +15,7 @@ jobs:
       id-token: write
     steps:
       - name: "Checkout"
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: "Set up Python"
         uses: actions/setup-python@v6
         with:

.github/workflows/update_backend.yml

@@ -7,7 +7,7 @@ jobs:
   update_compat:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
           python-version: '3'