Add GitHub Action to check for FIMS releases and create update issues#3
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Add GitHub Action to check for FIMS releases and create update issues#3
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* set verbosity to `quiet` in `tests/testthat.R` to suppress test output when running `devtools::test()` locally. * set verbosity to `quiet` in `tests/testthat/helper-aaa-quiet-test-output.R` to suppress output when running `testthat::test_package()` locally. This mirrors the "Show testthat output" (`test_check()`) step in the `call-r-cmd-check` GitHub Action workflow. * set `silent = TRUE` in `TMB::MakeADFun()` calls to suppress TMB output during tests. * use `suppressMessages()` to silence output from fims_frame tests and testthat template tests. * don't use `Rcerr` to print a message to the console when the ParameterVector index is out of range, since `throw` already handles the error output.
Bumps [actions/first-interaction](https://github.com/actions/first-interaction) from 1 to 2. - [Release notes](https://github.com/actions/first-interaction/releases) - [Commits](actions/first-interaction@v1...v2) --- updated-dependencies: - dependency-name: actions/first-interaction dependency-version: '2' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>
* document(check_fims.R): Add examples of strings passed to ... in
FIMS:::setup_and_run_gtest()
* refactor(fimsfit.R):
* Remove is.FIMSFits() function
* Remove "total" from number_of_parameters; only print it
as the sum of fixed_effects + random_effects
* document(fimsfit.R): Add comment referencing sdmTMB issue NOAA-FIMS#455 to
evaluate whether report should always use last.par.best
* document(initialize_modules.R): Clarify that dims field is necessary
to track dimensions for multivariate input (e.g., MVNORM) and may be
needed for other distributions
* update(data1.R): Remove check for CSV readability in R
* update(helper-integration-tests-setup-function.R): Replace 1:x with
seq_along() in for loop for safer indexing
Co-authored-by: Andrea-Havron-NOAA <Andrea-Havron-NOAA@users.noreply.github.com>
Co-authored-by: k-doering-NOAA <k-doering-NOAA@users.noreply.github.com>
Co-authored-by: kellijohnson-NOAA <kellijohnson-NOAA@users.noreply.github.com>
Co-authored-by: msupernaw <msupernaw@users.noreply.github.com>
Co-authored-by: nathanvaughan-NOAA <nathanvaughan-NOAA@users.noreply.github.com>
Co-authored-by: peterkuriyama-NOAA <peterkuriyama-NOAA@users.noreply.github.com>
* add README.md under the /tests directory as a quick reference for testing. It includes instructions on adding a new test, run tests, and debug tests. * add a C++ test template to inst/templates. * add a new R function `use_gtest_template()` to create a C++ test file using the template and register the test in `tests/gtest/CMakeLists.txt`. * add R unit tests for `use_gtest_template()`. * add a C++ test `tests/gtest/test_FIMSJson_JsonParser_WriteToFile.cpp` to verify error handling instructions outlined in the C++ test template. * update LogisticSelectivity C++ test to use the new template. * fix spelling errors and update WORDLIST. * Place `Rcpp::loadModule(module = "fims", what = TRUE)` inside the `.onLoad` function has been observed to fix R session crashes when running `devtools::load_all()` followed by `devtools::test()` in the package development workflow.
Co-authored-by: kellijohnson-NOAA <4108564+kellijohnson-NOAA@users.noreply.github.com>
…flow Co-authored-by: kellijohnson-NOAA <4108564+kellijohnson-NOAA@users.noreply.github.com>
Copilot
AI
changed the title
[WIP] Add GitHub action to remind updates on releases
Add GitHub Action to check for FIMS releases and create update issues
Nov 25, 2025
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@Andrea-Havron-NOAA I am going to assign you to this PR because I am uncertain if it should be merged into dev right now or a different branch. If we get it merged in by the end of the week to main then we can check to see if it works with the next FIMS release. |
kellijohnson-NOAA
requested review from
Andrea-Havron-NOAA
and removed request for
kellijohnson-NOAA
|
replaced with PR #6 |
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Adds a scheduled workflow to monitor FIMS releases and automatically create tracking issues when updates are needed.
Changes
.github/workflows/check-fims-release.ymlnoaa-fims/fimsauto-update,kind: refactorNotes
Uses GraphQL for issue creation to support GitHub's issue types feature (not available via REST API). Manual trigger via
workflow_dispatchavailable for testing.Warning
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