chore(deps): Bump the datalad group in /services/datalad with 4 updates by dependabot[bot] · Pull Request #3794 · OpenNeuroOrg/openneuro

dependabot · 2026-03-01T13:39:32Z

Bumps the datalad group in /services/datalad with 4 updates: bidsschematools, boto3, coverage and ruff.

Updates bidsschematools from 1.1.6 to 1.2.1

Release notes

Sourced from bidsschematools's releases.

v1.2.1

FIX: repair link in anatomical MRI table #297 (sappelhoff)

[ENH] Clarify requirements in Release Protocol #294 (franklin-feingold)

[INFRA+FIX] Use linkchecker (from a dedicated docker image) to check all URLs #293 (yarikoptic)

[ENH] Adding Contributors and updating contributions #284 (franklin-feingold)

[MISC] update Code of Conduct contact #281 (franklin-feingold)

[ENH] Update contributing guide and README to make discussion forums easy to find #279 (emdupre)

[ENH] Starter Kit dropdown menu #278 (franklin-feingold)

[ENH] BEP Update #277 (franklin-feingold)

[INFRA] Update pipenv #274 (sappelhoff)

[INFRA] Transpose the entity table and link to text anchors describing each entity #272 (sappelhoff)

[ENH] Add Twitter badge to README and link to website to landing page #268 (franklin-feingold)

[ENH] adding release guidelines #267 (franklin-feingold)

[FIX] Common principles: Fix filename in inheritance principle #261 (Lestropie)

[MISC] update modality references #258 (sappelhoff)

[INFRA] adding logo to RTD #256 (franklin-feingold)

[INFRA] add footer, replacing mkdocs/material advert with Github link #250 (sappelhoff)

[MISC] rename logo files, add a README of where they come from, fix favicon #249 (sappelhoff)

[MISC] updating MEG doc links, manufacturer names, and adding a missing MEG example #248 (sappelhoff)

[ENH] Add favicon to RTD #246 (franklin-feingold)

[MISC] Update Authors in BEP025 #241 (josator2)

[MISC] Document BEPs that are not active anymore, but have not been merged #240 (sappelhoff)

[FIX] remove ManufacturersAmplifierModelName (again) #236 (robertoostenveld)

[INFRA] Update release protocol #235 (effigies)

REL: 1.3.0-dev #234 (effigies)

[INFRA] Enable version panel for quickly finding previous versions #232 (effigies)

[FIX] use \<label> for _desc- - not some \<value> + clarify \<value> #224 (yarikoptic)

[FIX] Clarify Appendix II: The list of licenses only lists examples #222 (sappelhoff)

[FIX] Trivial column header fix #220 (nicholst)

[INFRA] Add clarification on merge methods to DECISION_MAKING #217 (sappelhoff)

[INFRA] Enable permalink urls to appear at (sub)section headings #214 (yarikoptic)

[INFRA] bump up mkdocs-materials version #211 (sappelhoff)

[ENH] Various proposed changes to diffusion derivatives #205 (Lestropie)

[MISC] Fix github username for @chrisgorgo #204 (chrisgorgo)

[FIX] clarify example 3 in common principles (inheritance) #202 (sappelhoff)

[MISC] Expand entity table for MEG/EEG/iEEG specific files #198 (sappelhoff)

[FIX] make iEEG ToC more consistent with MEG and EEG #191 (robertoostenveld)

[FIX] Clarify use of acq and task parameters in EEG, MEG, and iEEG #188 (sappelhoff)

[FIX] clarify use of tools for CTF data renaming #187 (sappelhoff)

[MISC] Add bep006 and bep010 to completed beps and fix links #186 (sappelhoff)

[FIX] change file for definition of electrical stimulation labels from _electrodes.json to _events.json #185 (ezemikulan)

[ENH] relax ieeg channel name requirements of letters and numbers only #182 (sappelhoff)

[FIX] make MEG section headings and ToC consistent to the EEG and iEEG specs #181 (robertoostenveld)

[FIX] make section headings and ToC consistent between meg and eeg specs #180 (robertoostenveld)

[MISC] Spelling fixes #179 (DimitriPapadopoulos)

[ENH] Alternative folder organization for raw, derived, and source data #178 (chrisgorgo)

[INFRA] Adding instructions for naming PRs #177 (chrisgorgo)

[MISC] Introducing Stefan Appelhoff as the first Maintainer #176 (chrisgorgo)

[FIX] Clarify name of "BrainVision" format #175 (JegouA)

[FIX] Fixes spelling of continuous #171 (emdupre)

... (truncated)

Commits

b0fbcc1 Merge pull request #291 from bids-standard/rel/1.2.1
6ed53fd Added date of release
2eddc5d Merge pull request #302 from bids-standard/master
6fbadb0 [DOC] Auto-generate changelog entry for PR #284
fbbda72 Merge pull request #284 from franklin-feingold/contrib
9922048 Merge pull request #294 from franklin-feingold/relprod
d1825e4 [DOC] Auto-generate changelog entry for PR #277
252c8d6 Merge pull request #277 from franklin-feingold/enh/bepupdate
50d6389 travis happy
60fee8d Update src/06-extensions.md
Additional commits viewable in compare view

Updates boto3 from 1.42.41 to 1.42.54

Commits

ae39e43 Merge branch 'release-1.42.54'
f07efd3 Bumping version to 1.42.54
36bad54 Add changelog entries from botocore
ab66554 Merge branch 'release-1.42.53'
9699df9 Merge branch 'release-1.42.53' into develop
dfa0446 Bumping version to 1.42.53
4399285 Add changelog entries from botocore
d08d5d2 Merge branch 'release-1.42.52'
16b1743 Merge branch 'release-1.42.52' into develop
89e187c Bumping version to 1.42.52
Additional commits viewable in compare view

Updates coverage from 7.13.3 to 7.13.4

Changelog

Sourced from coverage's changelog.

Version 7.13.4 — 2026-02-09

Fix: the third-party code fix in 7.13.3 required examining the parent directories where coverage was run. In the unusual situation that one of the parent directories is unreadable, a PermissionError would occur, as described in issue 2129_. This is now fixed.

Fix: in test suites that change sys.path, coverage.py could fail with "RuntimeError: Set changed size during iteration" as described and fixed in pull 2130_. Thanks, Noah Fatsi.

We now publish ppc64le wheels, thanks to Pankhudi Jain <pull 2121_>_.

.. _pull 2121: coveragepy/coveragepy#2121 .. _issue 2129: coveragepy/coveragepy#2129 .. _pull 2130: coveragepy/coveragepy#2130

.. _changes_7-13-3:

Commits

4f78d57 build: no need to publish status.json
f8616ff docs: sample HTML for 7.13.4
fcf8c68 docs: prep for 7.13.4
189ecfd docs: thanks Pankhudi Jain for ppc64le wheels #2121
58aade0 build: add support for ppc64le architecture (#2121)
8ea42c8 chore: bump actions/attest-build-provenance (#2131)
c09595f docs: Janine put a lot of effort into debugging issue #2128
8ee1760 docs: Greg wrote a great issue: #2129
76ba043 docs: thanks, Noah Fatsi
371fcc5 fix: set fixed paths_list in TreeMatcher init (#2130)
Additional commits viewable in compare view

Updates ruff from 0.15.0 to 0.15.2

Release notes

Sourced from ruff's releases.

0.15.2

Release Notes

Released on 2026-02-19.

Preview features
Expand the default rule set (#23385)

In preview, Ruff now enables a significantly expanded default rule set of 412 rules, up from the stable default set of 59 rules. The new rules are mostly a superset of the stable defaults, with the exception of these rules, which are removed from the preview defaults:

multiple-imports-on-one-line (E401)

module-import-not-at-top-of-file (E402)

module-import-not-at-top-of-file (E701)

multiple-statements-on-one-line-semicolon (E702)

useless-semicolon (E703)

none-comparison (E711)

true-false-comparison (E712)

not-in-test (E713)

not-is-test (E714)

type-comparison (E721)

lambda-assignment (E731)

ambiguous-variable-name (E741)

ambiguous-class-name (E742)

ambiguous-function-name (E743)

undefined-local-with-import-star (F403)

undefined-local-with-import-star-usage (F405)

undefined-local-with-nested-import-star-usage (F406)

forward-annotation-syntax-error (F722)

If you use preview and prefer the old defaults, you can restore them with configuration like:
# ruff.toml
[lint]
select = ["E4", "E7", "E9", "F"]
pyproject.toml
[tool.ruff.lint]
select = ["E4", "E7", "E9", "F"]
If you do give them a try, feel free to share your feedback in the GitHub discussion!
[flake8-pyi] Also check string annotations (PYI041) (#19023)
Bug fixes

... (truncated)

Changelog

Sourced from ruff's changelog.

0.15.2

Released on 2026-02-19.

Preview features
Expand the default rule set (#23385)

In preview, Ruff now enables a significantly expanded default rule set of 412 rules, up from the stable default set of 59 rules. The new rules are mostly a superset of the stable defaults, with the exception of these rules, which are removed from the preview defaults:

multiple-imports-on-one-line (E401)

module-import-not-at-top-of-file (E402)

module-import-not-at-top-of-file (E701)

multiple-statements-on-one-line-semicolon (E702)

useless-semicolon (E703)

none-comparison (E711)

true-false-comparison (E712)

not-in-test (E713)

not-is-test (E714)

type-comparison (E721)

lambda-assignment (E731)

ambiguous-variable-name (E741)

ambiguous-class-name (E742)

ambiguous-function-name (E743)

undefined-local-with-import-star (F403)

undefined-local-with-import-star-usage (F405)

undefined-local-with-nested-import-star-usage (F406)

forward-annotation-syntax-error (F722)

If you use preview and prefer the old defaults, you can restore them with configuration like:
# ruff.toml
[lint]
select = ["E4", "E7", "E9", "F"]
pyproject.toml
[tool.ruff.lint]
select = ["E4", "E7", "E9", "F"]
If you do give them a try, feel free to share your feedback in the GitHub discussion!

... (truncated)

Commits

9d18ee9 Hard code workflow name and cancel-in-progress only for PRs (#23431)
7cc15f0 Bump 0.15.2 (#23430)
d1b5443 Add extension mapping to configuration file options (#23384)
222574a Expand the default rule set (#23385)
1465b5d [flake8-async] Fix in_async_context logic (#23426)
410902f [pyupgrade] Fix handling of typing.{io,re} (UP035) (#23131)
729610a [ty] Fall back to ambiguous for large control flow graphs (#23399)
1425c18 [ty] Add code folding support
97acaae [ty] Fix stack overflow for self-referential TypeOf in annotations (#23407)
1f380c8 [ty] Update tests reveal_type and Never (#23418)
Additional commits viewable in compare view

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Bumps the datalad group in /services/datalad with 4 updates: [bidsschematools](https://github.com/bids-standard/bids-specification), [boto3](https://github.com/boto/boto3), [coverage](https://github.com/coveragepy/coveragepy) and [ruff](https://github.com/astral-sh/ruff). Updates `bidsschematools` from 1.1.6 to 1.2.1 - [Release notes](https://github.com/bids-standard/bids-specification/releases) - [Changelog](https://github.com/bids-standard/bids-specification/blob/master/Release_Protocol.md) - [Commits](bids-standard/bids-specification@schema-1.1.6...v1.2.1) Updates `boto3` from 1.42.41 to 1.42.54 - [Release notes](https://github.com/boto/boto3/releases) - [Commits](boto/boto3@1.42.41...1.42.54) Updates `coverage` from 7.13.3 to 7.13.4 - [Release notes](https://github.com/coveragepy/coveragepy/releases) - [Changelog](https://github.com/coveragepy/coveragepy/blob/main/CHANGES.rst) - [Commits](coveragepy/coveragepy@7.13.3...7.13.4) Updates `ruff` from 0.15.0 to 0.15.2 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.15.0...0.15.2) --- updated-dependencies: - dependency-name: bidsschematools dependency-version: 1.2.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: datalad - dependency-name: boto3 dependency-version: 1.42.54 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: datalad - dependency-name: coverage dependency-version: 7.13.4 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: datalad - dependency-name: ruff dependency-version: 0.15.2 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: datalad ... Signed-off-by: dependabot[bot] <support@github.com>

codecov · 2026-03-01T13:40:30Z

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 45.17%. Comparing base (ac8c628) to head (7cd2f89).

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #3794   +/-   ##
=======================================
  Coverage   45.17%   45.17%           
=======================================
  Files         643      643           
  Lines       34579    34579           
  Branches     1676     1678    +2     
=======================================
  Hits        15622    15622           
  Misses      18820    18820           
  Partials      137      137

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dependabot bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Mar 1, 2026

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chore(deps): Bump the datalad group in /services/datalad with 4 updates#3794

chore(deps): Bump the datalad group in /services/datalad with 4 updates#3794
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v1.2.1

Version 7.13.4 — 2026-02-09

0.15.2

Release Notes

Preview features

Bug fixes

0.15.2

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