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@PennLINC

Lifespan Informatics and Neuroimaging Center

The Lifespan Informatics and Neuroimaging Center at the University of Pennylvannia
README.md

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  1. qsiprep qsiprep Public

    Preprocessing of diffusion MRI

    Python 179 62

  2. qsirecon qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    Python 21 17

  3. aslprep aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    Python 57 21

  4. xcp_d xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    Python 109 38

  5. CuBIDS CuBIDS Public

    Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

    Python 30 13

  6. babs babs Public

    BIDS App Bootstrap (BABS)

    Python 12 7

Repositories

Showing 10 of 218 repositories
  • ModelArray Public

    ModelArray: an R package for statistical analysis of fixel-wise data and beyond

    PennLINC/ModelArray’s past year of commit activity
    R 7 4 30 3 Updated Apr 23, 2026
  • transdiagnostic_executive_function Public

    Data resource that combines longitudinal multi-modal imaging data with rich clinical and cognitive phenotyping

    PennLINC/transdiagnostic_executive_function’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 2 Updated Apr 23, 2026
  • grmpy_opendata Public
    PennLINC/grmpy_opendata’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 23, 2026
  • aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    PennLINC/aslprep’s past year of commit activity
    Python 57 21 45 6 Updated Apr 23, 2026
  • nibs Public

    Myelin mapping test-retest study

    PennLINC/nibs’s past year of commit activity
    Jupyter Notebook 1 MIT 0 3 0 Updated Apr 23, 2026
  • niiterm Public
    PennLINC/niiterm’s past year of commit activity
    Rust 0 BSD-3-Clause 0 0 0 Updated Apr 23, 2026
  • mebold-trt Public

    Code for curating and processing the MEBOLD-TRT dataset.

    PennLINC/mebold-trt’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Apr 23, 2026
  • sypres-docs Public
    PennLINC/sypres-docs’s past year of commit activity
    JavaScript 1 MIT 0 3 6 Updated Apr 22, 2026
  • babs Public

    BIDS App Bootstrap (BABS)

    PennLINC/babs’s past year of commit activity
    Python 12 MIT 7 46 5 Updated Apr 22, 2026
  • ModelArrayIO Public

    Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.

    PennLINC/ModelArrayIO’s past year of commit activity
    Python 0 BSD-3-Clause 0 12 3 Updated Apr 22, 2026
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