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@RasmussenLab

RasmussenLab

The Rasmussen group focuses on proteome and genome variation, coding variation and deep learning for integration of genomics, proteomics and clinical data.

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  1. vamb vamb Public

    Variational autoencoder for metagenomic binning

    Python 305 49

  2. MOVE MOVE Public

    MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

    Jupyter Notebook 88 30

  3. phamb phamb Public

    Downstream processing of VAMB binning for Viral Elucidation

    Python 50 7

  4. pimms pimms Public

    Imputing proteomics data using deep learning models

    Python 30 2

  5. IntroToML IntroToML Public

    Forked from Center-for-Health-Data-Science/IntroToML

    Machine Learning course at Copenhagen University, Faculty of Health and Medical Sciences, Center for Health Data Science

    Jupyter Notebook 4

  6. taxconverter taxconverter Public

    Unifies the presentation of taxonomic classifiers output

    Python 4 1

Repositories

Showing 10 of 39 repositories
  • pimms Public

    Imputing proteomics data using deep learning models

    RasmussenLab/pimms’s past year of commit activity
    Python 30 GPL-3.0 2 3 3 Updated Oct 29, 2025
  • HAPI Public

    Script to run HAPI (Haplotype-Aware Probabilistic model for Indels) to identify the CCR5delta32 deletion in ancient low coverage dna samples

    RasmussenLab/HAPI’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Oct 22, 2025
  • DoBSeqWF Public

    Workflow for analysing two-dimensional overlapped pooled sequencing data

    RasmussenLab/DoBSeqWF’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Oct 20, 2025
  • PlasMAAG Public

    PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples

    RasmussenLab/PlasMAAG’s past year of commit activity
    Python 1 MIT 0 2 0 Updated Sep 25, 2025
  • njab Public

    Not just another biomarkers: Functionality for biomarker discovery

    RasmussenLab/njab’s past year of commit activity
    Python 2 MIT 1 1 0 Updated Sep 20, 2025
  • vamb Public

    Variational autoencoder for metagenomic binning

    RasmussenLab/vamb’s past year of commit activity
    Python 305 MIT 49 46 7 Updated Aug 27, 2025
  • VAEs_for_biomedical_data_integration Public

    This is the repository for the paper "On the use of VAEs for biomedical data integration".

    RasmussenLab/VAEs_for_biomedical_data_integration’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 13, 2025
  • misc_scripts Public

    Miscellaneous reusable scripts

    RasmussenLab/misc_scripts’s past year of commit activity
    Rust 0 MIT 0 0 0 Updated Aug 1, 2025
  • python_package Public template

    Example Python package

    RasmussenLab/python_package’s past year of commit activity
    Python 1 MIT 1 0 1 Updated Jul 1, 2025
  • taxconverter Public

    Unifies the presentation of taxonomic classifiers output

    RasmussenLab/taxconverter’s past year of commit activity
    Python 4 MIT 1 4 2 Updated May 27, 2025
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