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Mhellstr/chemical system with plot grid molecules#378

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mhellstr wants to merge 30 commits intotrunkfrom
mhellstr/chemical-system-with-plot-grid-molecules
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Mhellstr/chemical system with plot grid molecules#378
mhellstr wants to merge 30 commits intotrunkfrom
mhellstr/chemical-system-with-plot-grid-molecules

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WLChen1118 and others added 30 commits February 13, 2026 10:59
- Fixed bug in AMSConvenientAnalysisJob classes introduced when made compatible with pisa
  * atom_indices passed as arguments were no longer used
  * AMSRDFJob failed always
- Added tests for AMSConvenientAnalysisJob classes
- Added tests for VACF and Viscosity jobs
Rosa Bulo (REB) SCMSUITE-- SO107: Fixed bug mdanalysis recipes
…fixes

Update assertions in mdanalysis tests SO--
Disable intersphinx extension in PLAMS docs build
SO101. Support MESP branch for additional DENSF calculation for hydro…
Removed compatibility note for AMS2023.
Add what's new section to PLAMS for 2026 SO--
Added code block with command to execute get_water_indices.py
Updated the documentation for BAND: NiO with DFT+U, including example usage and results line.
Update ConformersGeneration.rst
Revise BAND_NiO_HubbardU documentation
Update HydrogenBondsFromMD documentation
…nguage specification (no syntax highlighting without it) SO--
docs: fix syntax highlighting for literalincludes of Python code
enforce SCM_DISABLE_MPI for AMSJob with engine VASP SO--
@mhellstr mhellstr requested a review from dormrod March 16, 2026 07:41
@mhellstr mhellstr closed this Mar 16, 2026
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6 participants