Bonsai

Analyze outbreak, antimicrobial resistance and virulence factors in bacteria.

Intended to visualize results from JASEN pipeline.

Installation

See the documentation for instructions on how to install and configure Bonsai.

Name		Name	Last commit message	Last commit date
Latest commit History 1,562 Commits
.github		.github
allele_cluster_service		allele_cluster_service
api		api
audit_log_service		audit_log_service
docs		docs
e2e_tests		e2e_tests
frontend		frontend
libs/api_client		libs/api_client
minhash_service		minhash_service
notification_service		notification_service
scripts		scripts
ska_service		ska_service
volumes		volumes
.dockerignore		.dockerignore
.editorconfig		.editorconfig
.gitignore		.gitignore
.nvmrc		.nvmrc
.readthedocs.yaml		.readthedocs.yaml
CHANGELOG.md		CHANGELOG.md
LICENSE		LICENSE
README.md		README.md
bootstrap.sh		bootstrap.sh
build_test.sh		build_test.sh
docker-compose.dev.yml		docker-compose.dev.yml
docker-compose.e2e_test.yml		docker-compose.e2e_test.yml
docker-compose.yml		docker-compose.yml
docker.env		docker.env
requirements.dev.txt		requirements.dev.txt
requirements.tooling.txt		requirements.tooling.txt