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add exporting list of branch IDs with largest cluster label #5

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add exporting list of branch IDs with largest cluster label #5

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13 changes: 13 additions & 0 deletions src/main.py
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Original file line number Diff line number Diff line change
Expand Up @@ -82,6 +82,19 @@ def main(args):

# Label the branch points in the graph with the correct branch labels
G = label_branch_points(G, branch_points, largest_cluster_label)

#export list of branches with largest cluster label
if args.segmentation_attribute == "label":
large_branches = []

for branch in branch_connectivity_graph.nodes:
if branch_connectivity_graph.nodes[branch]['label'] and branch_connectivity_graph.nodes[branch]['label'] == largest_cluster_label:
large_branches.append(branch)
large_branches.sort()

with open('large_branches.txt','w') as file:
for branch_id in large_branches:
file.write(f"{branch_id}\n")

if args.segmentation_attribute == "dist_from_largest":
# Calculate the distance from each branch to the nearest branch in the largest cluster
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