Issue088 uv dependencies

.github/workflows/python-publish-sdist.yml

@@ -0,0 +1,34 @@
+# This workflow will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Upload Python Package
+
+on:
+  push:
+    tags:
+      - '*'
+    branches:
+      - main
+  release:
+    types: [created]
+
+jobs:
+  pypi:
+    name: Publish sdist to Pypi
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: astral-sh/setup-uv@v5
+        with:
+          python-version: '3.11'
+      - run: uv build --sdist
+      # Check that basic features work and we didn't miss to include crucial files
+      - name: import test (sdist)
+        run: uv run --isolated --no-project -p 3.11 --with dist/*.tar.gz spectrally/tests/prepublish.py
+      - name: publish
+        run: uv publish -t ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/python-publish-wheel.yml

@@ -0,0 +1,39 @@
+# This workflow will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Upload Python Package wheels
+
+on:
+  push:
+    tags:
+      - '*'
+    branches:
+      - main
+  release:
+    types: [created]
+
+jobs:
+  pypi:
+    name: Publish wheel to Pypi
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+        python-version: ["3.10", "3.11", "3.12"]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v4
+      - uses: astral-sh/setup-uv@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - run: uv build --wheel
+      # Check that basic features work and we didn't miss to include crucial files
+      - name: import test (wheel)
+        run: uv run --isolated --no-project -p ${{ matrix.python-version }} --with dist/*.whl spectrally/tests/prepublish.py
+      - name: publish
+        run: uv publish -t ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/python-testing-matrix.yml

@@ -18,28 +18,24 @@ jobs:
       fail-fast: true
       matrix:
         os: [ubuntu-latest, windows-latest, macos-latest]
-        python-version: ["3.8", "3.9", "3.10", "3.11"]
+        python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
 
     steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+
+    # git checkout
+    - uses: actions/checkout@v4
+
+    # Install uv
+    - name: Install uv
+      uses: astral-sh/setup-uv@v5
       with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        python -m pip install flake8 pytest
-        pip install -r requirements.txt
-    - name: Lint with flake8
-      run: |
-        # stop the build if there are Python syntax errors or undefined names
-        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
-        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-    - name: install spectrally
-      run: |
-        pip install -e ".[dev]" # --no-build-isolation
-    - name: Test with pytest
-      run: |
-        pytest spectrally/tests -v -x
+          python-version: ${{ matrix.python-version }}
+
+    # Install library
+    - name: Install the project
+      run: uv sync --all-extras --dev
+
+    # Run tests
+    - name: Run tests
+      # For example, using `pytest`
+      run: uv run pytest spectrally/tests

CLASSIFIERS.txt

@@ -0,0 +1,9 @@
+Development Status :: 5 - Production/Stable
+Intended Audience :: Science/Research
+Programming Language :: Python :: 3
+Programming Language :: Python :: 3.10
+Programming Language :: Python :: 3.11
+Programming Language :: Python :: 3.12
+Programming Language :: Python :: 3.13
+Programming Language :: Python :: 3.14
+Natural Language :: English

MANIFEST.in

@@ -3,6 +3,4 @@
 include MANIFEST.in
 include LICENSE.txt
 include pyproject.toml
-include _updateversion.py
-recursive-include spectrally/tests/input *
-recursive-include spectrally/ *.csv
+include CLASSIFIERS.txt

pyproject.toml

@@ -1,4 +1,66 @@
 [build-system]
-requires = ["setuptools>=40.8.0",
-	    "wheel",
-	    ]
+requires = ["setuptools", "setuptools_scm"]
+build-backend = "setuptools.build_meta"
+
+
+[tool.setuptools]
+packages = ["spectrally", "spectrally.tests"]
+
+
+[tool.setuptools_scm]
+version_file = "spectrally/_version.py"
+
+
+[tool.setuptools.dynamic]
+classifiers = {file = ["CLASSIFIERS.txt"]}
+
+
+[project]
+name = "spectrally"
+readme = "README.md"
+license = {text = "MIT"}
+dynamic = ["version", "classifiers"]
+description = "Generic spectrum fitting library with multiple constraints"
+authors = [
+    {name = "Didier VEZINET", email = "didier.vezinet@gmail.com"},
+]
+maintainers = [
+    {name = "Didier VEZINET", email = "didier.vezinet@gmail.com"},
+]
+keywords = [
+    "data", "spectrum fitting", "Collection",
+]
+# due to astropy >= 6.1 and to end-of-life of 3.9
+# see https://devguide.python.org/versions/
+requires-python = ">=3.10"
+dependencies = [
+	"bsplines2d>=0.0.30",
+	"pandas",
+	"requests",
+]
+
+
+[project.urls]
+Homepage = "https://github.com/ToFuProject/spectrally"
+Issues = "https://github.com/ToFuProject/spectrally/issues"
+
+
+[project.entry-points."spectrally"]
+spectrally = "spectrally.scripts.spectrally_bash:main"
+spectrally-version = 'spectrally.scripts.spectrallyversion:main'
+specrally-custom = 'spectrally.scripts.spectrallycustom:main'
+
+
+[dependency-groups]
+dev = [
+	"pytest",
+]
+
+
+[project.optional-dependencies]
+linting = [
+  'ruff'
+]
+formatting = [
+  'ruff'
+]