v7.6.0

MCMCChains v7.6.0

Diff since v7.5.0

Compatibility for PrettyTables@3.

Minimum Julia version bumped to 1.10.

Merged pull requests:

• Add compatibility with PrettyTable v3.0 (#498) (@gragusa)

Closed issues:

• corner plot displays wrong y-axes (#426)
• Fix ReviewDog for formatter CI (#495)

v7.5.0

MCMCChains v7.5.0

Diff since v7.4.0

Add a method for MCMCDiagnosticTools.bfmi(::Chains). This computes the Bayesian Fraction of Missing Information for a chain or set of chains. Previously one had to extract a raw Array from the Chains object and pass that to bfmi.

Merged pull requests:

• BFMI function (#494) (@evandieren)
• Bump version to 7.5.0, start HISTORY.md (#496) (@mhauru)

Closed issues:

• computing mode (#419)
• chainscat error in combining single chains (#427)
• Add function to calculate BFMI (#484)

v7.4.0

MCMCChains v7.4.0

Diff since v7.3.0

Merged pull requests:

• Prior/posterior predictive check plots (#319) (@PaulinaMartin96)

v7.3.0

MCMCChains v7.3.0

Diff since v7.2.2

Tweak the definition of AbstractMCMC.chainscat and AbstractMCMC.chainsstack to work better when a single chain is sampled "in parallel". See #492 for details.

This version also re-exports AbstractMCMC.chainsstack.

Merged pull requests:

• Make chainsstack([c]) put info fields into vectors (#492) (@penelopeysm)

v7.2.2

MCMCChains v7.2.2

Diff since v7.2.1

Removed compatibility with PrettyTables=3 (MCMCChains is not compatible with it yet).

Merged pull requests:

• Revert PrettyTables=3 compat, add a test (#490) (@penelopeysm)

v7.2.1

MCMCChains v7.2.1

Diff since v7.2.0

Changed the behaviour of chain.info.samplerstate to be concatenated rather than overridden by the first chain when concatenating / stacking multiple chains.

Merged pull requests:

• CompatHelper: bump compat for PrettyTables to 3, (keep existing compat) (#485) (@github-actions[bot])
• concatenate sampler states from chains (#488) (@penelopeysm)

Closed issues:

• Avoiding numerical issues in show for problematic chains (#410)
• Indexing a multible parameters fails (#411)
• Issue with save_state only returning one state instead of one state per chain (#487)

v7.2.0

MCMCChains v7.2.0

Diff since v7.1.0

Changelog

• Implemented Energy Plot in #329

Merged pull requests:

• Energy plots (#329) (@PaulinaMartin96)
• CompatHelper: bump compat for CairoMakie to 0.15 for package docs, (keep existing compat) (#481) (@github-actions[bot])
• CompatHelper: bump compat for CategoricalArrays to 1 for package docs, (keep existing compat) (#483) (@github-actions[bot])

v7.1.0

MCMCChains v7.1.0

Diff since v7.0.1

Changelog

• Implemented Violin Plot in #316 (v7.0.1) but it's a new functionality so releasing v7.1.0 to follow semantic versioning.

Merged pull requests:

• Re-release 7.0.1 as 7.1.0 to follow semantic versioning (#479) (@shravanngoswamii)

v7.0.1

MCMCChains v7.0.1

Diff since v7.0.0

Changelog

• Implemented Violin Plot

Merged pull requests:

• New Plot: Violin Plot Implementation (#316) (@PaulinaMartin96)
• CompatHelper: bump compat for CairoMakie to 0.13 for package docs, (keep existing compat) (#472) (@github-actions[bot])

v7.0.0

MCMCChains v7.0.0

Diff since v6.0.7

Breaking changes

• display() only prints the chains header and not statistical evaluations anymore.
• describe() is now a pure IO function and does not return anything.

Merged pull requests:

• Make Chains objects display only information and not statistical eval (#307) (@PaulinaMartin96)
• CompatHelper: bump compat for CairoMakie to 0.13 for package docs, (keep existing compat) (#468) (@github-actions[bot])
• Documentation and Turing Navigation CI improvement (#471) (@shravanngoswamii)
• Add JuliaFormatter workflow, update macOS CI to aarch64 (#474) (@penelopeysm)
• 1.6.0 CI fails, need to bump minimum version (#476) (@penelopeysm)
• DocsGHA: Grant write permission to pull-requests event (#477) (@shravanngoswamii)

Closed issues:

• names() and get() for a specific section should always return parameters in the same order (#443)
• update branch protection rules (#475)