inlmisc 0.5.5

inlmisc 0.5.5

• Stop running example in RecreateLibrary function.

inlmisc 0.5.4

• Explicitly set stringsAsFactors option in all calls to functions data.frame and as.data.frame.

inlmisc 0.5.3

• Fix inkscape command in render-tables.R script.

• Fix bug in SetPolygons that resulted in error.

• Fix invalid URL's.

inlmisc 0.5.2

• Fixed invalid URL's.

inlmisc 0.5.1

• Import wordcloud2 and webshot packages, and suggest png package. The webshot package has as a dependency the external program PhantomJS.

• Add CreateWordCloud, used to create a word cloud from a frequency table of words, and plot to a PNG file.

inlmisc 0.5.0

• Add top-level README.Rmd file.
• Remove LICENSE.note file from package, and replace witha repo-only LICENSE.md file.
• Add DISCLAIMER.md file.
• In LaTeX preamble, include new solution for printing fancy header on all pages.
• In AddInsetMap, add feature argument, used to add one or more spatial features to the inset map.

inlmisc 0.4.9

• In LaTeX preamble, omit group separators in the decimal part when using siunitx package.

• In GetColors, type change from diverging to sequential for color schemes: "berlin", "broc", "cork", "lisbon", "oleron", "tofino", and "vik". Results from CPTs not actually having a zero entry.

• In PlotMap, fix bug resulting from change in raster::crop that returns an error when the subset is empty, was previously returning NULL.

• In FindOptimalSubset, stop setting state of random number generator when seed argument is NULL.

Version 0.4.8

inlmisc 0.4.8

• In FindOptimalSubset function, add numIslands argument, used to specify the number of islands, was previously dependent on the parallel argument; change default value of elitism argument from 0 to 5-percent of the island population.

• Add misc/latex-packages.txt file: contains a list of required LaTeX packages that are not included in the default installation of TinyTeX; use the inlmisc:::InstallLatexPackages() command to install these packages into TinyTeX.

• In LaTeX preamble, replace xcolor package with color, eliminates an annoying warning when compiling document.

• In GetColors function, add "turbo" color scheme.

• In SetHinge function, non-backward compatible change to allocating colors on each side of hinge, is only perceivable when the number of colors is small (n < 10).

• Rename PrintHelpPages function to PrintPackageHelp. Preserve empty lines in the Examples section of help documentation; fix parsing bug associated with identifying code blocks; tidy main header for each help topic; add internal argument, used to print help pages flagged with keyword internal; replace hr argument with sep; add title_to_name argument, used to replace the help-topic "title" with its "name"; add notrun argument, used to remove ## Not run comments; include internal links by default.

• In Grid2Polygons, add check_validity argument, used to check the validity of polygons.

• Fix bugs in raw/build-datasets.R and raw/render-tables.R files that incorrectly called IsColor function.

• Change package dependency from R >= 3.4.0 to R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R.

Version 0.4.7

inlmisc 0.4.7

• In SetPolygons, set checkValidity argument to 2 and suppress warnings.

inlmisc 0.4.6

• Add "usgs_article" template for R Markdown documents. This template is experimental and subject to change in the future.

• Set checkValidity argument to 2 (check and try to buffer by zero distance to repair) in many of the rgeos function calls.

• In AddColorKey, remove border line around color blocks.

• In Grid2Polygons, improved performance; change polygon cropping function from raster::crop to SetPolygons.

• In RecreateLibrary, remove github option that allowed package installation from GitHub repositories.

• Add PrintHelpPages function, used to print the HTML code associated with help pages of a loaded R package.

• In BuildVignettes function, rearrange order of arguments and add doc argument, used to specify the directory to write vignette output files.

• In GetColors function, add "bpy" (blue-pink-yellow) color scheme.

• In AddPoints function, change interval to reflect labels, that is, open at the left and closed at right.

• Add AddIntervals function, used to add vertical interval symbols to plots. Replaces use of graphics::arrows in PlotGraph function, and avoids the warning message resulting from an arrow length less than 1/1000 inch.

• In misc/preamble.tex file: reduce hyphenation and prevent writing into margin.

• In PlotGraph function: improve handling of cases where range of y values is zero; extend y-axis limits to prevent symbols from being drawn on an axis limit; change margin line for the main title, axis title, and axis labels; decrease size of upper margin by 0.2 lines; add add.grid argument, determines whether to draw a rectangular grid.

• In PrintFigure function, allow heading on single figure.

• In AddSearchButton function, fix bug that prevented popup from opening when openPopup argument is true.

Version 0.4.4

inlmisc 0.4.4

• Add BuildVignettes function, used to build package vignettes.

• In SummariseBudget function, improve memory management.

• Change package imports by adding data.table and removing dplyr.

• Add SetHinge function, used to specify a hinge location in a color palette.

• In PrintTable function: d argument can be of class 'matrix'; and a default caption is no longer added when title and headnotes arguments are not specified.

• Tidy help documentation

• Add GetRegionOfInterest function, used to calculate the region of interest from spatial points.

• In FindOptimalSubset function: improve matrix construction of suggestions; change calculation of number of bits in a number.

• In AddColorKey function, rearrange order of arguments.

• In PlotCrossSection function: add bend.label argument, used to place labels at top of the bend-in-section lines; change default value of bg.col argument from "#FFFFFFD8" to NULL, and for scale.loc argument from "bottom" to NULL; make font/line color darker for section breaks and features.

• Rename GetTolColors function to GetColors. Add additional color schemes; replace start and end arguments with stops, a vector of length 2; change blind argument option from "monochromacy" to "monochrome"; return a variant of the GetColors function when argument n is unspecified.

• For leaflet-search plugin, change version from 2.8.0 to 2.9.6 and tidy wrapper functions.

• In CreateWebMap function, add service argument for specifying the mapping service to use for accessing base-map tiles.

• Change required R version from >= 3.2.0 to >= 3.4.0.

Version 0.4.3

inlmisc 0.4.3

• Add AddNorthArrow function, was previously defined as an internal function.

• In AddScaleBar function: non-backward compatible argument changes. Remove offset argument and replace with ..., see help documentation for details.

• Make dichromat a suggested package.

• Remove viridisLite from suggested packages.

• Add GetInsetLocation function, used to determine the location for a inset graphics in the main plot region.

• In AddPoints function: add bty, draw.legend, and draw.points arguments.

• In PlotGraph function: add xpd argument, determines whether point and (or) line symbols are clipped to the plot region; change default color scheme; change contents of fill argument (non-backward compatible) and add a fillcolor argument; provide main argument a default value of NULL.

• In FindOptimalSubset function, add monitor argument to check on status of GA run.

• In GetTolColors function: add color schemes; change default scheme from "bright" to "smooth rainbow"; add start, end, bias, reverse, blind, and gray arguments.

Version 0.4.2

inlmisc 0.4.2

• In GetTolColors function, revise color schemes based on issue 3.0 of technical note.

• In PlotGraph function, improve placement of tick marks.

• Remove colorspace from suggested packages and replace with viridisLite.

• In ToScientific function, better identify whether to print numeric values in fixed or scientific notation.

• In AddScaleBar function, non-backward compatible argument changes and formatting improvements.

• In PlotGraph function: fix bug that resulted in an error when type = "n"; and add main argument for placing a title at the top of the plot.

• Make gstat and roxygen2 suggested packages.

• Remove httr, maps, and maptools from suggested packages.

• In misc/preamble.tex file: tidy code; include fix for spacing after number in List of Figures and List of Tables; remove helvet package; and add float package, provides the H float modifier option.

• In AddInsetMap: add an optional e argument, a numeric vector describing the extent of the smaller axis-aligned rectangle; add "center" option for loc argument; and add bty argument, determines if a box is to be drawn around the inset map.

• Update leaflet-search.min.js and leaflet-search.min.css files to version 2.8.0.

• Add PrintFigure function, used to print the LaTeX code associated with a figure.

Version 0.4.0

inlmisc 0.4.0

• Add GetTolColors function, used to access color palettes by Paul Tol.

• Avoid importing all functions from a package.

• Remove AddCertificate function, no longer needed with new version of R (3.4.3).

• Add PrintTable function, used to print the LaTeX code associated with a data.frame object.

• In PlotMap function, remove option to map points.

• In ReadCodeChunks function, remove dependency on knitr-intro.Rmd file in example.

• In AddColorKey function, replace scientific argument with scipen, see getOption("scipen") command.

• In AddColorKey function, add log argument to specify axis to be logarithmic.

• In AddColorKey, use m x 10^n format for tick labels written in scientific notation.

• In RecreateLibrary function, add parallel argument to install packages from source using parallel processes.

• In ToScientific function, add big.mark argument with default value of ",".

• In ToScientific function, fix bug that formated 0 as NA when type = "plotmath".

• In CreateWebMap function, pass ... arguments to leaflet::leaflet function, these arguments were previously passed to the leaflet::leafletOptions function.

• In CreateWebMap function, add maps argument to specify which base maps to include.

• In CreateWebMap function, remove coordinates and zoom level information from top of map.

• Add AddHomeButton, AddClusterButton, and AddSearchButton, and AddLegend functions, used to add additional web map elements.

• In FindOptimalSubset function, allow integer chromosomes to be specified for the suggestions argument.

• Add additional argument checks using checkmate package.

Version 0.3.5

inlmisc 0.3.5

• In PlotMap function, fix bug introduced by previous fix of raster range calculation.

• Made AddCertificate an 'internal' function.

• Add argument checks using checkmate package.

inlmisc 0.3.4

• In PlotMap function, fix bug in range calculation of raster values by removing finite = TRUE.

• In PlotMap function, fix extent of background image, rivers, lakes, and roads using par("usr").

• Add FindOptimalSubset function, used to identify an optimal subset using a genetic algorithm.

inlmisc 0.3.3

• In AddPoints function: add option to scale symbol size to radius;
  revise calculation of symbol size and legend labels.

• In PlotMap function, let r argument accept any object that can be converted to a RasterLayer class.

• In LaTeX preamble: add verbatimbox package; add maketitle format.

• In PlotMap function, add simplify argument, used to convert raster to polygons prior to plotting.

• In Grid2Polygons function: allow grd argument to be an object of class SpatialPixelsDataFrame or Raster*; transform coordinate reference system (CRS) of ply argument to match the CRS of the grd argument; and add zlim argument, a limit on the attribute variable.

• In ToScientific function, add arguments scipen, delimiter, and ...; and rename lab.type argument to type. Code in place for backwards compatibility.