Finishing up Final Project from Andrew Verdegaal#9
Open
aaverdegaal wants to merge 51 commits intoYale-EEB723:masterfrom
Open
Finishing up Final Project from Andrew Verdegaal#9aaverdegaal wants to merge 51 commits intoYale-EEB723:masterfrom
aaverdegaal wants to merge 51 commits intoYale-EEB723:masterfrom
Conversation
…; background added for project
…netic relationships)
…a uniformed file mix to use for initial phylogenetic analysis/ genome comparison
…ine; added notes on work and images produced thus far
… this analysis, including individual graphs of dissimilar accessory regions; added more notes
…to find alternative methods to align Salmonella genomes and then construct a phylogenetic tree through FastTree or Phylip
…wnstream programs to use; this project may turn into comparing alignment/ phylogenetic methods for bacterial whole genome study
…otes about today and some papers
…lysis pipeline; Added a couple papers and notes for today and yesterday
…ids used as references in analysis
…pine, agent, and Clustage pipeline; modified and added notes that were missing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Hey Casey
I believe everything here is in order now! Thank you so much for an amazing learning experience in the class.
Also, if you want the citations done differently, please let me know, I will gladly fix it if need be.