aertslab SCENIC · Discussions · GitHub

SCENIC-related questions
* General SCENIC questions s-aibar

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How to use SCENIC when comparing dataset representing two conditions?

singcell asked May 8, 2020 in * General SCENIC questions · Unanswered

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I only got a few regulons after running ctx.

antss8 asked Dec 30, 2025 in * General SCENIC questions · Unanswered

1
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Low regulon recovery in pySCENIC ctx for two butterfly scRNA-seq datasets

francicco asked Oct 27, 2025 in * General SCENIC questions · Unanswered

1
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How to select differential regulons between to conditions in a cell type specific matter

jeji0209 asked Jan 5, 2023 in * General SCENIC questions · Unanswered

2
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Do seeds have a significant impact on the processing results of pyscenic?

The-G-Cat asked Nov 30, 2025 in * General SCENIC questions · Unanswered

0
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AUCELL UMAP Results

RitsukaTing asked Sep 3, 2025 in * General SCENIC questions · Unanswered

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How to use the optional step to incorporate chip-seq experiments from ENCODE and other databases?

RitsukaTing asked Aug 21, 2025 in * General SCENIC questions · Unanswered

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What is the effect of running pyscenic on the results of cell sampling of the sample？

jklupup asked Jul 15, 2025 in * General SCENIC questions · Unanswered

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Motif Redundancy Resolution

rodriguesk asked Jul 9, 2025 in * General SCENIC questions · Unanswered

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filter_for_annotation in prune2df

flde asked May 28, 2025 in * General SCENIC questions · Unanswered

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Couldn't run pyscenic aucell

baijiexu asked Oct 1, 2022 in [Python] · Unanswered

1
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Perturbation simulation

fstrijth started Mar 25, 2025 in Ideas

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How to shorten running time on large dataset?

Li-ZhiD asked Mar 17, 2025 in * General SCENIC questions · Unanswered

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pyscenic grn run time for large datasets

twu-bcm asked Oct 27, 2022 in [Python] · Unanswered

2
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SCENIC use in commercial context

td329 asked Mar 11, 2025 in * General SCENIC questions · Unanswered

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GRCm39 mouse assembly

Lattesnow asked Feb 3, 2025 in * General SCENIC questions · Unanswered

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Why are the results of AUCell not centered around 0.5 (for a random "regulon")?

scyrusm asked Jan 22, 2024 in * General SCENIC questions · Unanswered

1
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AUCell comparability for integrated data

ashenflower asked Jan 21, 2025 in * General SCENIC questions · Unanswered

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Full SCENIC Pipeline for chicken

austinkunch asked Sep 16, 2023 in * General SCENIC questions · Unanswered

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Comparing TFs across different cell types whithin two conditions (healthy/diseased)

ashenflower asked Dec 20, 2024 in * General SCENIC questions · Unanswered

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Question on highlightedTF on 2.3_motifEnrichment.RDs, raising more than the top50PerTarget

mapo121 asked Dec 18, 2024 in * General SCENIC questions · Unanswered

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Both self-activating and self-inhibiting transcription factors in the regulon output

LiuCanidk asked Dec 8, 2024 in * General SCENIC questions · Unanswered

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TypeError: Must supply at least one delayed object

olaf-c asked Nov 23, 2024 in [Python] · Unanswered

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CoexMethod. how to choose after running NULL

iichelhadi asked Nov 19, 2024 in [R] · Unanswered

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Celltype and condition specific GRNs

ctspencer asked Apr 8, 2024 in * General SCENIC questions · Unanswered

1