Update repository references from incubator-gluten to gluten after TLP graduation

.github/ISSUE_TEMPLATE/config.yml

@@ -16,5 +16,5 @@
 blank_issues_enabled: false
 contact_links:
   - name: Gluten Discussions
-    url: https://github.com/apache/incubator-gluten/discussions
+    url: https://github.com/apache/gluten/discussions
     about: Ask questions or discuss new feature ideas here.

.github/PULL_REQUEST_TEMPLATE

@@ -2,7 +2,7 @@
 Thank you for submitting a pull request! Here are some tips:
 
 1. For first-time contributors, please read our contributing guide:
-   https://github.com/apache/incubator-gluten/blob/main/CONTRIBUTING.md
+   https://github.com/apache/gluten/blob/main/CONTRIBUTING.md
 2. If necessary, create a GitHub issue for discussion beforehand to avoid duplicate work.
 3. If the PR is specific to a single backend, include [VL] or [CH] in the PR title to indicate the
    Velox or ClickHouse backend, respectively.

.github/workflows/dev_cron/pr_issue_linker.js

@@ -29,7 +29,7 @@ function detectIssueID(title) {
 }
 
 async function appendToPRDescription(github, context, pullRequestNumber, issuesID) {
-  const issueURL = `https://github.com/apache/incubator-gluten/issues/${issuesID}`;
+  const issueURL = `https://github.com/apache/gluten/issues/${issuesID}`;
   const issueReference = `#${issuesID}`
 
   // Fetch the current PR description.

.github/workflows/velox_weekly.yml

@@ -62,7 +62,7 @@ jobs:
           export PATH=$JAVA_HOME/bin:$PATH
 
           # action/checkout does not work centos7 anymore, so we clone the branch instead.
-          git clone -b main --depth=1 https://github.com/apache/incubator-gluten.git && cd incubator-gluten/
+          git clone -b main --depth=1 https://github.com/apache/gluten.git && cd gluten/
           if [ ${{ github.event_name }} = "pull_request" ]; then
             git fetch origin ${{ github.ref }}:pr_branch && git checkout pr_branch
           fi

CONTRIBUTING.md

@@ -44,15 +44,15 @@ please add at least one UT to ensure code quality and reduce regression issues f
 
 Please update document for your proposed code change if necessary.
 
-If a new config property is being introduced, please update [Configuration.md](https://github.com/apache/incubator-gluten/blob/main/docs/Configuration.md).
+If a new config property is being introduced, please update [Configuration.md](https://github.com/apache/gluten/blob/main/docs/Configuration.md).
 
 ### Code Style
 
 ##### Java/Scala code style
-Developer can import the code style setting to IDE and format Java/Scala code with spotless maven plugin. See [Java/Scala code style](https://github.com/apache/incubator-gluten/blob/main/docs/developers/NewToGluten.md#javascala-code-style).
+Developer can import the code style setting to IDE and format Java/Scala code with spotless maven plugin. See [Java/Scala code style](https://github.com/apache/gluten/blob/main/docs/developers/NewToGluten.md#javascala-code-style).
 
 ##### C/C++ code style
-There are some code style conventions need to comply. See [CppCodingStyle.md](https://github.com/apache/incubator-gluten/blob/main/docs/developers/CppCodingStyle.md).
+There are some code style conventions need to comply. See [CppCodingStyle.md](https://github.com/apache/gluten/blob/main/docs/developers/CppCodingStyle.md).
 
 For Velox backend, developer can just execute `dev/formatcppcode.sh` to format C/C++ code. It requires `clang-format-15`
 installed in your development env.
@@ -68,7 +68,7 @@ You can execute a script to fix license header issue, as the following shows.
 ### Gluten CI
 
 ##### ClickHouse Backend CI
-To check CI failure for CH backend, please log in with the public account/password provided [here](https://github.com/apache/incubator-gluten/blob/main/docs/get-started/ClickHouse.md#new-ci-system).
+To check CI failure for CH backend, please log in with the public account/password provided [here](https://github.com/apache/gluten/blob/main/docs/get-started/ClickHouse.md#new-ci-system).
 To re-trigger CH CI, please post the below comment on PR page:
 
 `Run Gluten Clickhouse CI`
@@ -79,7 +79,7 @@ To check CI failure for Velox backend, please go into the GitHub action page fro
 To see the perf. impact on Velox backend, you can comment `/Benchmark Velox` on PR page to trigger a pretest. The benchmark
 (currently TPC-H) result will be posted after completed.
 
-If some new dependency is required to be installed, you may need to do some change for CI docker at [this folder](https://github.com/apache/incubator-gluten/tree/main/tools/gluten-te).
+If some new dependency is required to be installed, you may need to do some change for CI docker at [this folder](https://github.com/apache/gluten/tree/main/tools/gluten-te).
 
 ### Code Review
 

README.md

@@ -126,7 +126,7 @@ to view past discussions, or [subscribe to the mailing list](mailto:dev-subscrib
 
 ### Slack Channel (English)
 
-Request an invitation to the ASF Slack workspace via [this page](https://github.com/apache/incubator-gluten/discussions/8429). Once invited, you can join the **incubator-gluten** channel.
+Request an invitation to the ASF Slack workspace via [this page](https://github.com/apache/gluten/discussions/8429). Once invited, you can join the **gluten** channel.
 
 The ASF Slack login entry: https://the-asf.slack.com/.
 
@@ -166,6 +166,6 @@ Gluten is licensed under [Apache License Version 2.0](https://www.apache.org/lic
 
 Gluten was initiated by Intel and Kyligence in 2022. Several other companies are also actively contributing to its development, including BIGO, Meituan, Alibaba Cloud, NetEase, Baidu, Microsoft, IBM, Google, etc.
 
-<a href="https://github.com/apache/incubator-gluten/graphs/contributors">
-  <img src="https://contrib.rocks/image?repo=apache/incubator-gluten&columns=25" />
+<a href="https://github.com/apache/gluten/graphs/contributors">
+  <img src="https://contrib.rocks/image?repo=apache/gluten&columns=25" />
 </a>

backends-clickhouse/src/main/scala/org/apache/gluten/backendsapi/clickhouse/CHRuleApi.scala

@@ -181,7 +181,7 @@ object CHRuleApi {
   }
 
   /**
-   * Since https://github.com/apache/incubator-gluten/pull/883.
+   * Since https://github.com/apache/gluten/pull/883.
    *
    * TODO: Remove this since tricky to maintain.
    */

backends-clickhouse/src/main/scala/org/apache/gluten/backendsapi/clickhouse/CHValidatorApi.scala

@@ -114,7 +114,7 @@ object CHValidatorApi {
    * and make it into a new column which the shuffle will refer to. But we need to remove it from
    * the result columns from the shuffle.
    *
-   * Since https://github.com/apache/incubator-gluten/pull/1071.
+   * Since https://github.com/apache/gluten/pull/1071.
    */
   def supportShuffleWithProject(outputPartitioning: Partitioning, child: SparkPlan): Boolean = {
     child match {

backends-clickhouse/src/main/scala/org/apache/gluten/execution/CHColumnarToCarrierRowExec.scala

@@ -29,7 +29,7 @@ case class CHColumnarToCarrierRowExec(override val child: SparkPlan)
   override def rowType0(): Convention.RowType = CHCarrierRowType
   override protected def withNewChildInternal(newChild: SparkPlan): SparkPlan =
     copy(child = newChild)
-  // Since https://github.com/apache/incubator-gluten/pull/1595.
+  // Since https://github.com/apache/gluten/pull/1595.
   override protected def doExecuteColumnar(): RDD[ColumnarBatch] = {
     if (child.supportsColumnar) {
       child.executeColumnar()

backends-clickhouse/src/main/scala/org/apache/gluten/expression/CHExpressions.scala

@@ -24,7 +24,7 @@ import org.apache.spark.sql.catalyst.expressions.aggregate.AggregateFunction
 
 // Static helper object for handling expressions that are specifically used in CH backend.
 object CHExpressions {
-  // Since https://github.com/apache/incubator-gluten/pull/1937.
+  // Since https://github.com/apache/gluten/pull/1937.
   def createAggregateFunction(context: SubstraitContext, aggregateFunc: AggregateFunction): Long = {
     val expressionExtensionTransformer =
       ExpressionExtensionTrait.findExpressionExtension(aggregateFunc.getClass)

backends-clickhouse/src/test/scala/org/apache/gluten/execution/GlutenFunctionValidateSuite.scala

@@ -861,7 +861,7 @@ class GlutenFunctionValidateSuite extends GlutenClickHouseWholeStageTransformerS
   }
 
   test("test parse string with blank to integer") {
-    // issue https://github.com/apache/incubator-gluten/issues/4956
+    // issue https://github.com/apache/gluten/issues/4956
     val sql = "select  cast(concat(' ', cast(id as string)) as bigint) from range(10)"
     runQueryAndCompare(sql)(checkGlutenPlan[ProjectExecTransformer])
   }
@@ -915,7 +915,7 @@ class GlutenFunctionValidateSuite extends GlutenClickHouseWholeStageTransformerS
     }
   }
 
-  test("test issue: https://github.com/apache/incubator-gluten/issues/6561") {
+  test("test issue: https://github.com/apache/gluten/issues/6561") {
     val sql =
       """
         |select

backends-clickhouse/src/test/scala/org/apache/gluten/execution/compatibility/GlutenClickhouseFunctionSuite.scala

@@ -72,7 +72,7 @@ class GlutenClickhouseFunctionSuite extends ParquetSuite {
     }
   }
 
-  test("https://github.com/apache/incubator-gluten/issues/6938") {
+  test("https://github.com/apache/gluten/issues/6938") {
     val testSQL =
       s"""
          |select * from (
@@ -372,7 +372,7 @@ class GlutenClickhouseFunctionSuite extends ParquetSuite {
     }
   }
 
-  test("GLUTEN-7545: https://github.com/apache/incubator-gluten/issues/7545") {
+  test("GLUTEN-7545: https://github.com/apache/gluten/issues/7545") {
     withTable("regexp_test") {
       sql("create table if not exists regexp_test (id string) using parquet")
       sql("insert into regexp_test values('1999-6-1')")

backends-clickhouse/src/test/scala/org/apache/gluten/execution/hive/GlutenClickHouseNativeWriteTableSuite.scala

@@ -514,7 +514,7 @@ class GlutenClickHouseNativeWriteTableSuite
       ("decimal_field", "decimal(23,12)"),
       ("date_field", "date")
       // ("timestamp_field", "timestamp")
-      // FIXME https://github.com/apache/incubator-gluten/issues/8053
+      // FIXME https://github.com/apache/gluten/issues/8053
     )
     val origin_table = "origin_table"
     withSource(genTestData(), origin_table) {

backends-clickhouse/src/test/scala/org/apache/gluten/execution/tpch/GlutenClickHouseTPCHColumnarShuffleParquetAQESuite.scala

@@ -319,7 +319,7 @@ class GlutenClickHouseTPCHColumnarShuffleParquetAQESuite extends ParquetTPCHSuit
     }
   }
 
-  ignore("https://github.com/apache/incubator-gluten/issues/7726") {
+  ignore("https://github.com/apache/gluten/issues/7726") {
     runQueryAndCompare(Arm.withResource(
       Source.fromFile(new File(s"$queryPath/tpch-schema-related/7726.sql"), "UTF-8"))(_.mkString)) {
       df =>

backends-velox/src-iceberg/test/scala/org/apache/gluten/execution/enhanced/VeloxIcebergSuite.scala

@@ -325,7 +325,7 @@ class VeloxIcebergSuite extends IcebergSuite {
       val lastExecId = statusStore.executionsList().last.executionId
       val executionMetrics = statusStore.executionMetrics(lastExecId)
 
-      // TODO: fix https://github.com/apache/incubator-gluten/issues/11510
+      // TODO: fix https://github.com/apache/gluten/issues/11510
       assert(executionMetrics(metrics("numWrittenFiles").id).toLong == 0)
     }
   }

backends-velox/src/main/scala/org/apache/gluten/backendsapi/velox/VeloxBackend.scala

@@ -154,7 +154,7 @@ object VeloxBackendSettings extends BackendSettingsApi {
         case ParquetReadFormat =>
           val parquetOptions = new ParquetOptions(CaseInsensitiveMap(properties), SQLConf.get)
           if (parquetOptions.mergeSchema) {
-            // https://github.com/apache/incubator-gluten/issues/7174
+            // https://github.com/apache/gluten/issues/7174
             Some(s"not support when merge schema is true")
           } else {
             None

backends-velox/src/main/scala/org/apache/gluten/backendsapi/velox/VeloxListenerApi.scala

@@ -315,7 +315,7 @@ object VeloxListenerApi {
 
     var parsed: Map[String, String] = GlutenConfigUtil.parseConfig(conf.getAll.toMap)
 
-    // Workaround for https://github.com/apache/incubator-gluten/issues/7837
+    // Workaround for https://github.com/apache/gluten/issues/7837
     if (isDriver && !inLocalMode(conf)) {
       parsed += (COLUMNAR_VELOX_CACHE_ENABLED.key -> "false")
     }

backends-velox/src/main/scala/org/apache/gluten/backendsapi/velox/VeloxValidatorApi.scala

@@ -90,11 +90,11 @@ class VeloxValidatorApi extends ValidatorApi {
       child: SparkPlan): Option[String] = {
     if (!BackendsApiManager.getSettings.supportEmptySchemaColumnarShuffle()) {
       if (outputAttributes.isEmpty) {
-        // See: https://github.com/apache/incubator-gluten/issues/7600.
+        // See: https://github.com/apache/gluten/issues/7600.
         return Some("Shuffle with empty output schema is not supported")
       }
       if (child.output.isEmpty) {
-        // See: https://github.com/apache/incubator-gluten/issues/7600.
+        // See: https://github.com/apache/gluten/issues/7600.
         return Some("Shuffle with empty input schema is not supported")
       }
     }

backends-velox/src/test/scala/org/apache/gluten/execution/ArrowCsvScanSuite.scala

@@ -97,7 +97,7 @@ class ArrowCsvScanWithTableCacheSuite extends ArrowCsvScanSuiteBase {
   }
 
   /**
-   * Test for GLUTEN-8453: https://github.com/apache/incubator-gluten/issues/8453. To make sure no
+   * Test for GLUTEN-8453: https://github.com/apache/gluten/issues/8453. To make sure no
    * error is thrown when caching an Arrow Java query plan.
    */
   test("csv scan v1 with table cache") {
@@ -107,7 +107,7 @@ class ArrowCsvScanWithTableCacheSuite extends ArrowCsvScanSuiteBase {
   }
 }
 
-/** Since https://github.com/apache/incubator-gluten/pull/5850. */
+/** Since https://github.com/apache/gluten/pull/5850. */
 @Ignore
 abstract class ArrowCsvScanSuite extends ArrowCsvScanSuiteBase {
 

backends-velox/src/test/scala/org/apache/gluten/execution/MiscOperatorSuite.scala

@@ -1998,7 +1998,7 @@ class MiscOperatorSuite extends VeloxWholeStageTransformerSuite with AdaptiveSpa
     }
   }
 
-  // Enable the test after fixing https://github.com/apache/incubator-gluten/issues/6827
+  // Enable the test after fixing https://github.com/apache/gluten/issues/6827
   ignore("Test round expression") {
     val df1 = runQueryAndCompare("SELECT round(cast(0.5549999999999999 as double), 2)") { _ => }
     checkLengthAndPlan(df1, 1)
@@ -2032,7 +2032,7 @@ class MiscOperatorSuite extends VeloxWholeStageTransformerSuite with AdaptiveSpa
     }
   }
 
-  // Since https://github.com/apache/incubator-gluten/pull/7330.
+  // Since https://github.com/apache/gluten/pull/7330.
   test("field names contain non-ASCII characters") {
     withTempPath {
       path =>

backends-velox/src/test/scala/org/apache/gluten/execution/VeloxColumnarCacheSuite.scala

@@ -109,7 +109,7 @@ class VeloxColumnarCacheSuite extends VeloxWholeStageTransformerSuite with Adapt
     }
   }
 
-  // See issue https://github.com/apache/incubator-gluten/issues/8497.
+  // See issue https://github.com/apache/gluten/issues/8497.
   test("Input fallen back vanilla Spark columnar scan") {
     def withId(id: Int): Metadata =
       new MetadataBuilder().putLong("parquet.field.id", id).build()

backends-velox/src/test/scala/org/apache/gluten/extension/columnar/transition/VeloxTransitionSuite.scala

@@ -82,7 +82,7 @@ class VeloxTransitionSuite extends SharedSparkSession with TransitionSuiteBase {
     val out = BackendTransitions.insert(in, outputsColumnar = false)
     // No explicit transition needed for ArrowNative-to-Velox.
     // FIXME: Add explicit transitions.
-    //  See https://github.com/apache/incubator-gluten/issues/7313.
+    //  See https://github.com/apache/gluten/issues/7313.
     assert(
       out == VeloxColumnarToRowExec(
         BatchUnary(

backends-velox/src/test/scala/org/apache/gluten/functions/ScalarFunctionsValidateSuite.scala

@@ -496,7 +496,7 @@ abstract class ScalarFunctionsValidateSuite extends FunctionsValidateSuite {
     }
   }
 
-  // FIXME: Ignored: https://github.com/apache/incubator-gluten/issues/7600.
+  // FIXME: Ignored: https://github.com/apache/gluten/issues/7600.
   ignore("monotonically_increasintestg_id") {
     runQueryAndCompare("""SELECT monotonically_increasing_id(), l_orderkey
                          | from lineitem limit 100""".stripMargin) {

cpp-ch/local-engine/Parser/ExpressionParser.cpp

@@ -345,7 +345,7 @@ ExpressionParser::NodeRawConstPtr ExpressionParser::parseExpression(ActionsDAG &
             }
             else if ((isMap(denull_input_type) || isArray(denull_input_type) || isTuple(denull_input_type)) && isString(denull_output_type))
             {
-                /// https://github.com/apache/incubator-gluten/issues/9049
+                /// https://github.com/apache/gluten/issues/9049
                 result_node = toFunctionNode(actions_dag, "sparkCastComplexTypesToString", args);
             }
             else if (isString(denull_input_type) && substrait_type.has_bool_())
@@ -357,7 +357,7 @@ ExpressionParser::NodeRawConstPtr ExpressionParser::parseExpression(ActionsDAG &
             else if (isString(denull_input_type) && isInt(denull_output_type))
             {
                 /// Spark cast(x as INT) if x is String -> CH cast(trim(x) as INT)
-                /// Refer to https://github.com/apache/incubator-gluten/issues/4956 and https://github.com/apache/incubator-gluten/issues/8598
+                /// Refer to https://github.com/apache/gluten/issues/4956 and https://github.com/apache/gluten/issues/8598
                 const auto * trim_str_arg = addConstColumn(actions_dag, std::make_shared<DataTypeString>(), " \t\n\r\f");
                 args[0] = toFunctionNode(actions_dag, "trimBothSpark", {args[0], trim_str_arg});
                 args.emplace_back(addConstColumn(actions_dag, std::make_shared<DataTypeString>(), output_type->getName()));

cpp-ch/local-engine/Parser/scalar_function_parser/arrayHighOrderFunctions.cpp

@@ -96,7 +96,7 @@ class FunctionParserArrayTransform : public FunctionParser
         {
             /// Convert Array(T) to Array(U) if needed, Array(T) is the type of the first argument of transform.
             /// U is the argument type of lambda function. In some cases Array(T) is not equal to Array(U).
-            /// e.g. in the second query of https://github.com/apache/incubator-gluten/issues/6561, T is String, and U is Nullable(String)
+            /// e.g. in the second query of https://github.com/apache/gluten/issues/6561, T is String, and U is Nullable(String)
             /// The difference of both types will result in runtime exceptions in function capture.
             const auto & src_array_type = parsed_args[0]->result_type;
             DataTypePtr dst_array_type = std::make_shared<DataTypeArray>(lambda_args.front().type);

cpp-ch/local-engine/Storages/Output/NormalFileWriter.cpp

@@ -39,7 +39,7 @@ const std::vector<std::string> FileNameGenerator::SUPPORT_PLACEHOLDERS{"{id}", "
 
 /// For Nullable(Map(K, V)) or Nullable(Array(T)), if the i-th row is null, we must make sure its nested data is empty.
 /// It is for ORC/Parquet writing compatiability. For more details, refer to
-/// https://github.com/apache/incubator-gluten/issues/8022 and https://github.com/apache/incubator-gluten/issues/8021
+/// https://github.com/apache/gluten/issues/8022 and https://github.com/apache/gluten/issues/8021
 static ColumnPtr truncateNestedDataIfNull(const ColumnPtr & column)
 {
     if (const auto * col_const = checkAndGetColumn<ColumnConst>(column.get()))
@@ -166,7 +166,7 @@ DB::Block NormalFileWriter::castBlock(const DB::Block & block) const
 
     /// In case input block didn't have the same types as the preferred schema, we cast the input block to the preferred schema.
     /// Notice that preferred_schema is the actual file schema, which is also the data schema of current inserted table.
-    /// Refer to issue: https://github.com/apache/incubator-gluten/issues/6588
+    /// Refer to issue: https://github.com/apache/gluten/issues/6588
     size_t index = 0;
     const auto & preferred_schema = file->getPreferredSchema();
     for (auto & column : res)

cpp/velox/operators/plannodes/CudfVectorStream.cc

@@ -57,7 +57,7 @@ bool CudfVectorStreamBase::hasNext() {
     // driver to make the current task open to spilling.
     //
     // When a task is getting spilled, it should have been suspended so has zero running threads, otherwise there's
-    // possibility that this spill call hangs. See https://github.com/apache/incubator-gluten/issues/7243.
+    // possibility that this spill call hangs. See https://github.com/apache/gluten/issues/7243.
     // As of now, non-zero running threads usually happens when:
     // 1. Task A spills task B;
     // 2. Task A tries to grow buffers created by task B, during which spill is requested on task A again.

cpp/velox/operators/plannodes/RowVectorStream.cc

@@ -59,7 +59,7 @@ bool RowVectorStream::hasNext() {
     // driver to make the current task open to spilling.
     //
     // When a task is getting spilled, it should have been suspended so has zero running threads, otherwise there's
-    // possibility that this spill call hangs. See https://github.com/apache/incubator-gluten/issues/7243.
+    // possibility that this spill call hangs. See https://github.com/apache/gluten/issues/7243.
     // As of now, non-zero running threads usually happens when:
     // 1. Task A spills task B;
     // 2. Task A tries to grow buffers created by task B, during which spill is requested on task A again.