Produced data and code used in the PAS project: Xing J, Gumerov VM, Zhulin IB. Origin and functional diversification of PAS domain, a ubiquitous intracellular sensor. Sci Adv. 2023;9(35):eadi4517. doi:10.1126/sciadv.adi4517.
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"PAS_clusters" contains sequences (in fasta format), alphafold structures, sequence logos, and distances for clusters, as well as a summary of all clusters.
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"PAS_phylogenetic_trees" contains multiple sequence alignments and phylogenetic trees used for tree building.
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"Scripts" contains all Python scripts used for analyses on PAS domain distributions.
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"Cluster_HMMs.zip" contains HMM for each cluster.
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"PAS domain sequences.zip" contains all sequences used for clustering (in fasta format).