Introductions to high throughput/performance and cloud computing
Presented materials:
- Getting the most out of HTC with workflows
- Using Bioconda for bioinformatics workflows
- Using Snakemake
- Introduction to Galaxy
- Options for using Galaxy
- Galaxy 101
- NGS data logistics
- Reference-based RNA-Seq data analysis
- Overview of the Galaxy Training Material
- Tool development and integration into Galaxy
- Building Galaxy Tools Using Planemo
- Galaxy from an administrator point of view
- Galaxy Deployment and Platform Options
- Ansible and Galaxy
- Set up a Production Galaxy with Ansible
- Ansible - for reference, won't be taught
- Ten Simple Rules for Setting up a Galaxy Instance as a Service
- Connecting Galaxy to a compute cluster
- Tool Dependencies and Conda
- Building a conda Recipe
These are set up on the SANBI OpenStack research cloud infrastructure and will only be available during the training.