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Specify branch for retrieving snakemake repository

enhancementNew feature or requestNew feature or request

Status: Open.

#21 In blekhmanlab/compendium;

· rabdill opened on Aug 12, 2025

Accession list parsing does not accommodate EOF newline char

bugSomething isn't workingSomething isn't working

Status: Open.

#20 In blekhmanlab/compendium;

· rabdill opened on Aug 6, 2025

Accommodate multiple taxa in database and workflow

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#18 In blekhmanlab/compendium;

· rabdill opened on Feb 12, 2025

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1.0: Publication

Manager doesn't detect when pipeline errors crashed snakemake

Status: Open.

#14 In blekhmanlab/compendium;

· rabdill opened on Jan 17, 2023

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1.0: Publication

Add ability to restart a failed project as single-end

Status: Open.

#13 In blekhmanlab/compendium;

· rabdill opened on Jan 13, 2023

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1.0: Publication

Add ability to restart a failed project with <code>matchids</code> option

Status: Open.

#12 In blekhmanlab/compendium;

· rabdill opened on Jan 13, 2023

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1.0: Publication

Automatic submission of projects miscounts restarted projects

Status: Open.

#11 In blekhmanlab/compendium;

· rabdill opened on Jan 12, 2023

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1.0: Publication

When user requests project status, it should include info from DB

Status: Open.

#10 In blekhmanlab/compendium;

· rabdill opened on Jan 12, 2023

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1.0: Publication

Checking status of re-run jobs overestimates progress

Status: Open.

#9 In blekhmanlab/compendium;

· rabdill opened on Jan 10, 2023

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1.0: Publication

Restructure project

Status: Open.

#8 In blekhmanlab/compendium;

· rabdill opened on Jan 9, 2023

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1.0: Publication

Pipeline stalls when prefetch can't reach a sample

Status: Open.

Bug

#5 In blekhmanlab/compendium;

· rabdill opened on Jan 8, 2023

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1.0: Publication

Add testing

Status: Open.

#4 In blekhmanlab/compendium;

· rabdill opened on Dec 21, 2022

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1.0: Publication