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  1. MiCall MiCall Public

    Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C

    Python 19 11

  2. aligntools aligntools Public

    A Python library for manipulation of CIGAR, MSA, and other alignment formats.

    Python 10

  3. Kive Kive Public

    Archival and automation of bioinformatic pipelines and data

    Python 8 1

  4. pyvdrm pyvdrm Public

    Tools for interpreting viral drug resistance mutations

    Python 3 1

  5. MiSeqQCReport MiSeqQCReport Public

    Quality control report for the MiSeq.

    Perl 2 1

  6. make_tree make_tree Public

    Simple script for drawing phylogenetic trees

    Python 2 1

Repositories

Showing 10 of 59 repositories
  • miseqinteropreader Public

    Parser for Illumina MiSeq InterOp binary files

    cfe-lab/miseqinteropreader’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 4, 2025
  • MiCall Public

    Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C

    cfe-lab/MiCall’s past year of commit activity
    Python 19 AGPL-3.0 11 124 5 Updated Dec 3, 2025
  • sds-viewer Public

    Public record of BC CfE Safety Data Sheets (SDS)

    cfe-lab/sds-viewer’s past year of commit activity
    Python 0 0 0 0 Updated Dec 1, 2025
  • gotoh Public

    Simple sequence aligner with high-level language bindings.

    cfe-lab/gotoh’s past year of commit activity
    Ruby 0 0 0 0 Updated Nov 18, 2025
  • CFEIntact Public

    A bioinformatics tool for detecting defects in HIV-1 proviral sequences.

    cfe-lab/CFEIntact’s past year of commit activity
    Python 2 MIT 2 9 (1 issue needs help) 0 Updated Oct 31, 2025
  • bblab-server Public

    Useful tools for HIV research from the Brockman and Brumme Lab at SFU

    cfe-lab/bblab-server’s past year of commit activity
    SCSS 0 1 4 1 Updated Oct 21, 2025
  • multicsv Public

    A Python library for handling multi-CSV format.

    cfe-lab/multicsv’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Oct 20, 2025
  • proviral Public
    cfe-lab/proviral’s past year of commit activity
    Python 0 MIT 2 3 1 Updated Sep 17, 2025
  • hla_algorithm Public

    Reimplementation of a bblab ruby script in python.

    cfe-lab/hla_algorithm’s past year of commit activity
    Python 0 0 1 0 Updated Sep 9, 2025
  • MiSeqQCReport Public

    Quality control report for the MiSeq.

    cfe-lab/MiSeqQCReport’s past year of commit activity
    Perl 2 BSD-3-Clause 1 10 0 Updated Mar 25, 2025