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Include reverse complement flag into holistic.csv
1 parent b024710 commit 7d75f03

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11 files changed

+265
-157
lines changed

11 files changed

+265
-157
lines changed

‎src/cfeintact/intact.py‎

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -63,6 +63,7 @@ class HolisticInfo:
6363
orfs_end: Optional[int] = dataclasses.field(default=None)
6464
# number of blast conseqs in the resulting match
6565
blast_n_conseqs: Optional[int] = dataclasses.field(default=None)
66+
is_reverse_complement: Optional[bool] = dataclasses.field(default=None)
6667

6768

6869
def iterate_values_from_csv(file_path):
@@ -764,10 +765,12 @@ def analyse_single_sequence(writer, sequence, blast_rows):
764765
if blast_orientation_statistics["minus"] < blast_orientation_statistics["plus"] \
765766
or reverse_aligned_sequence.alignment_score() <= forward_aligned_sequence.alignment_score():
766767
aligned_sequence = forward_aligned_sequence
768+
holistic.is_reverse_complement = False
767769
else:
768770
logger.info("Reversing sequence " + sequence.id)
769771
aligned_sequence = reverse_aligned_sequence
770772
sequence = aligned_sequence.this
773+
holistic.is_reverse_complement = True
771774

772775
# convert ORF positions to appropriate subtype
773776
forward_orfs, reverse_orfs = \

‎tests/expected-results-edgy/holistic.json‎

Lines changed: 32 additions & 16 deletions
Original file line numberDiff line numberDiff line change
@@ -10,7 +10,8 @@
1010
"blast_sseq_orfs_coverage": 1.0,
1111
"orfs_start": 789,
1212
"orfs_end": 8793,
13-
"blast_n_conseqs": 3
13+
"blast_n_conseqs": 3,
14+
"is_reverse_complement": false
1415
},
1516
"Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE": {
1617
"intact": true,
@@ -23,7 +24,8 @@
2324
"blast_sseq_orfs_coverage": 1.0,
2425
"orfs_start": 789,
2526
"orfs_end": 8793,
26-
"blast_n_conseqs": 3
27+
"blast_n_conseqs": 3,
28+
"is_reverse_complement": false
2729
},
2830
"small-sequence": {
2931
"intact": false,
@@ -36,7 +38,8 @@
3638
"blast_sseq_orfs_coverage": 0.0,
3739
"orfs_start": 354,
3840
"orfs_end": 8368,
39-
"blast_n_conseqs": 0
41+
"blast_n_conseqs": 0,
42+
"is_reverse_complement": false
4043
},
4144
"singleton-sequence": {
4245
"intact": false,
@@ -49,7 +52,8 @@
4952
"blast_sseq_orfs_coverage": 0.0,
5053
"orfs_start": 354,
5154
"orfs_end": 8368,
52-
"blast_n_conseqs": 0
55+
"blast_n_conseqs": 0,
56+
"is_reverse_complement": false
5357
},
5458
"empty-sequence": {
5559
"intact": false,
@@ -62,7 +66,8 @@
6266
"blast_sseq_orfs_coverage": 0.0,
6367
"orfs_start": 354,
6468
"orfs_end": 8368,
65-
"blast_n_conseqs": 0
69+
"blast_n_conseqs": 0,
70+
"is_reverse_complement": false
6671
},
6772
"empty-sequence2": {
6873
"intact": false,
@@ -75,7 +80,8 @@
7580
"blast_sseq_orfs_coverage": 0.0,
7681
"orfs_start": 354,
7782
"orfs_end": 8368,
78-
"blast_n_conseqs": 0
83+
"blast_n_conseqs": 0,
84+
"is_reverse_complement": false
7985
},
8086
"Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE.BUT.WITH.SOME.LOWERCASES": {
8187
"intact": true,
@@ -88,7 +94,8 @@
8894
"blast_sseq_orfs_coverage": 1.0,
8995
"orfs_start": 789,
9096
"orfs_end": 8793,
91-
"blast_n_conseqs": 3
97+
"blast_n_conseqs": 3,
98+
"is_reverse_complement": false
9299
},
93100
"small-sequence-with-lowercases": {
94101
"intact": false,
@@ -101,7 +108,8 @@
101108
"blast_sseq_orfs_coverage": 0.0,
102109
"orfs_start": 354,
103110
"orfs_end": 8368,
104-
"blast_n_conseqs": 0
111+
"blast_n_conseqs": 0,
112+
"is_reverse_complement": false
105113
},
106114
"Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE.BUT.REVERSECOMPLEMENTED": {
107115
"intact": true,
@@ -114,7 +122,8 @@
114122
"blast_sseq_orfs_coverage": 1.0,
115123
"orfs_start": 789,
116124
"orfs_end": 8793,
117-
"blast_n_conseqs": 3
125+
"blast_n_conseqs": 3,
126+
"is_reverse_complement": true
118127
},
119128
"Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE.BUT.REVERSED": {
120129
"intact": false,
@@ -127,7 +136,8 @@
127136
"blast_sseq_orfs_coverage": 0.0,
128137
"orfs_start": 354,
129138
"orfs_end": 8368,
130-
"blast_n_conseqs": 0
139+
"blast_n_conseqs": 0,
140+
"is_reverse_complement": false
131141
},
132142
"Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE.BUT.WITH-XS": {
133143
"intact": false,
@@ -140,7 +150,8 @@
140150
"blast_sseq_orfs_coverage": 1.0,
141151
"orfs_start": 789,
142152
"orfs_end": 8793,
143-
"blast_n_conseqs": 3
153+
"blast_n_conseqs": 3,
154+
"is_reverse_complement": true
144155
},
145156
"small-sequence-with-xs": {
146157
"intact": false,
@@ -153,7 +164,8 @@
153164
"blast_sseq_orfs_coverage": 0.0,
154165
"orfs_start": 354,
155166
"orfs_end": 8368,
156-
"blast_n_conseqs": 0
167+
"blast_n_conseqs": 0,
168+
"is_reverse_complement": false
157169
},
158170
"Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE.BUT.WITH-BAD-SYMBOLS": {
159171
"intact": false,
@@ -166,7 +178,8 @@
166178
"blast_sseq_orfs_coverage": 1.0,
167179
"orfs_start": 789,
168180
"orfs_end": 8793,
169-
"blast_n_conseqs": 3
181+
"blast_n_conseqs": 3,
182+
"is_reverse_complement": true
170183
},
171184
"Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE.BUT.WITH-DASHES": {
172185
"intact": false,
@@ -179,7 +192,8 @@
179192
"blast_sseq_orfs_coverage": 1.0,
180193
"orfs_start": 789,
181194
"orfs_end": 8793,
182-
"blast_n_conseqs": 3
195+
"blast_n_conseqs": 3,
196+
"is_reverse_complement": true
183197
},
184198
"small-sequence-with-dashes": {
185199
"intact": false,
@@ -192,7 +206,8 @@
192206
"blast_sseq_orfs_coverage": 0.0,
193207
"orfs_start": 354,
194208
"orfs_end": 8368,
195-
"blast_n_conseqs": 0
209+
"blast_n_conseqs": 0,
210+
"is_reverse_complement": false
196211
},
197212
"small-sequence-with-dashes/andwithslashestoo": {
198213
"intact": false,
@@ -205,6 +220,7 @@
205220
"blast_sseq_orfs_coverage": 0.0,
206221
"orfs_start": 354,
207222
"orfs_end": 8368,
208-
"blast_n_conseqs": 0
223+
"blast_n_conseqs": 0,
224+
"is_reverse_complement": false
209225
}
210226
}

‎tests/expected-results-large-csv/holistic.csv‎

Lines changed: 42 additions & 42 deletions
Original file line numberDiff line numberDiff line change
@@ -1,42 +1,42 @@
1-
qseqid,intact,qlen,hypermutation_probablility,inferred_subtype,blast_matched_qlen,blast_sseq_coverage,blast_qseq_coverage,blast_sseq_orfs_coverage,orfs_start,orfs_end,blast_n_conseqs
2-
KX505501.1,False,1997,0.7087072014754221,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,1997,0.2498456472525211,1.2158237356034052,0.17666166916541728,789,8793,4
3-
MN691959,False,9493,0.19667690182893238,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9493,1.0817040543321672,1.1086063415148004,1.0,789,8793,3
4-
MN692074,False,4178,0.36378645339477633,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,4178,0.5042189750977567,1.1728099569171853,0.411544227886057,789,8793,4
5-
MN692145,True,9689,0.1672411051048176,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9689,1.130479522535501,1.1271545051088863,1.0,789,8793,3
6-
MN090335,False,9069,0.1771850809736527,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9069,0.9842560197571517,1.0603153600176425,1.000374812593703,789,8793,3
7-
MN090376,False,8985,0.026415767987601813,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,8985,0.9784935171846059,1.0604340567612687,0.9943778110944528,789,8793,3
8-
MK115581.1,True,9495,0.6919440876652894,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9495,0.987034369211772,1.0046340179041602,1.0,789,8793,2
9-
MK115690.1,False,9689,0.051230576250981485,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9689,1.004630582424367,1.0113530808132933,1.0,789,8793,3
10-
MK115571.1,False,9394,0.8029570594372466,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9394,0.9866227618851615,1.0113902490951672,1.0,789,8793,2
11-
MK115514.1,False,9382,0.6482462132632603,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9382,0.9864169582218564,1.0173736943082499,1.0,789,8793,2
12-
MK115488.1,False,9623,0.6534999185838631,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9623,1.0255196542498457,1.0325262392185388,1.0,789,8793,6
13-
MK115030.1,False,9126,0.032014462397289556,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9126,0.994031693764149,1.0655270655270654,1.0,789,8793,3
14-
MK115498.1,True,9461,0.83547963060225,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9461,0.9866227618851615,1.0080329774865235,1.0,789,8793,2
15-
MK115211.1,False,9032,0.11818291879607423,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9032,0.995060712080675,1.0598981399468557,1.0,789,8793,3
16-
MK115158.1,False,9143,0.002572269807584293,Ref.47_BF.ES.08.P1942.GQ372987,9143,0.9921577414295317,0.9699223449633599,1.0,234,8211,1
17-
MK114705.1,False,9411,0.14584270737492833,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9411,1.098065445564931,1.122622463075125,1.0,789,8793,6
18-
MK114856.1,False,9477,1.0,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9477,1.0485696645400289,1.0812493405085997,1.0,789,8793,4
19-
MK115009.1,False,9207,1.0,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9207,0.9965013377238114,1.0590854784403172,1.0,789,8793,3
20-
MK115387.1,False,9136,0.5436355526687852,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9136,0.9796254373327845,1.040936952714536,1.0,789,8793,2
21-
MK115491.1,True,9422,0.8961809048805741,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9422,1.0037044659394938,1.0299299511780937,1.0,789,8793,2
22-
MK116110.1,False,8967,0.07021438897893317,Ref.B.TH.90.BK132.AY173951,8967,0.9957759004001778,0.9972119995539199,0.9986220719027934,140,8123,3
23-
MK115527.1,True,9481,0.770862998910788,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9481,0.9867256637168141,1.0056956017297753,1.0,789,8793,2
24-
MK114997.1,False,9055,0.05560625344150194,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9055,0.9784935171846059,1.0516841524019878,1.0,789,8793,2
25-
MK115518.1,True,9537,0.6408152618300496,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9537,0.9847705289154147,0.9996854356715948,1.0,789,8793,3
26-
MK115065.1,False,9214,0.033954952452739495,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9214,1.0080263428689031,1.069459518124593,1.0,789,8793,6
27-
MK115464.1,False,9663,1.0,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9663,0.9838444124305412,0.9893407844354756,1.0,789,8793,2
28-
MK115530.1,True,9544,0.5812621948015355,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9544,0.9866227618851615,0.9992665549036044,1.0,789,8793,2
29-
MK115520.1,False,9589,0.5225247969864292,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9589,0.9786993208479111,0.987902805297737,1.012118940529735,789,8793,3
30-
MK115503.1,True,9617,0.42870398270204335,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9617,0.987034369211772,0.9953207861079338,1.0,789,8793,2
31-
MK115570.1,False,9485,0.7406166892211931,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9485,0.9866227618851615,1.0057986294148655,1.0,789,8793,2
32-
MK115509.1,True,9353,0.7883768413537747,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9353,0.9866227618851615,1.0197797498128942,1.0,789,8793,2
33-
MK115702.1,False,9098,0.1454272422215308,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9098,0.9874459765383824,1.0596834469114091,1.0198650674662668,789,8793,4
34-
MK115095.1,False,9137,1.0,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9137,0.9907388351512657,1.060085367188355,1.0,789,8793,2
35-
MK115490.1,True,9347,0.8875203448314265,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9347,0.9848734307470673,1.0204343639670483,1.0,789,8793,3
36-
MK115576.1,True,9266,0.8197662757563093,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9266,0.9917678534677917,1.0342110943233327,1.0,789,8793,3
37-
OQ092466,False,9686,0.3858261890626,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9686,1.1015641078411196,1.1192442700805285,1.0,789,8793,3
38-
OQ092463,False,9605,0.21628713708846803,Ref.B.TH.90.BK132.AY173951,9605,1.0529124055135617,0.9884435190005205,1.0,140,8123,2
39-
OQ092465,False,9659,0.02412789935966586,Ref.28_BF.BR.99.BREPM12817.DQ085874,9659,1.0429696287964005,0.9620043482762191,1.0,200,8207,2
40-
OQ092462,False,9714,0.10883643311676816,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9714,1.1306853261988064,1.1301214741610048,1.0,789,8793,3
41-
OQ092464,False,9556,0.006887768010151674,Ref.28_BF.BR.99.BREPM12817.DQ085874,9556,1.0427446569178853,0.9678735872750105,1.0,200,8207,2
42-
OQ092467,False,9936,0.6438715160567257,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9936,1.1308911298621116,1.0962157809983897,1.0,789,8793,3
1+
qseqid,intact,qlen,hypermutation_probablility,inferred_subtype,blast_matched_qlen,blast_sseq_coverage,blast_qseq_coverage,blast_sseq_orfs_coverage,orfs_start,orfs_end,blast_n_conseqs,is_reverse_complement
2+
KX505501.1,False,1997,0.7087072014754221,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,1997,0.2498456472525211,1.2158237356034052,0.17666166916541728,789,8793,4,False
3+
MN691959,False,9493,0.19667690182893238,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9493,1.0817040543321672,1.1086063415148004,1.0,789,8793,3,False
4+
MN692074,False,4178,0.36378645339477633,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,4178,0.5042189750977567,1.1728099569171853,0.411544227886057,789,8793,4,False
5+
MN692145,True,9689,0.1672411051048176,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9689,1.130479522535501,1.1271545051088863,1.0,789,8793,3,False
6+
MN090335,False,9069,0.1771850809736527,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9069,0.9842560197571517,1.0603153600176425,1.000374812593703,789,8793,3,False
7+
MN090376,False,8985,0.026415767987601813,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,8985,0.9784935171846059,1.0604340567612687,0.9943778110944528,789,8793,3,False
8+
MK115581.1,True,9495,0.6919440876652894,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9495,0.987034369211772,1.0046340179041602,1.0,789,8793,2,False
9+
MK115690.1,False,9689,0.051230576250981485,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9689,1.004630582424367,1.0113530808132933,1.0,789,8793,3,False
10+
MK115571.1,False,9394,0.8029570594372466,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9394,0.9866227618851615,1.0113902490951672,1.0,789,8793,2,False
11+
MK115514.1,False,9382,0.6482462132632603,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9382,0.9864169582218564,1.0173736943082499,1.0,789,8793,2,False
12+
MK115488.1,False,9623,0.6534999185838631,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9623,1.0255196542498457,1.0325262392185388,1.0,789,8793,6,False
13+
MK115030.1,False,9126,0.032014462397289556,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9126,0.994031693764149,1.0655270655270654,1.0,789,8793,3,False
14+
MK115498.1,True,9461,0.83547963060225,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9461,0.9866227618851615,1.0080329774865235,1.0,789,8793,2,False
15+
MK115211.1,False,9032,0.11818291879607423,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9032,0.995060712080675,1.0598981399468557,1.0,789,8793,3,False
16+
MK115158.1,False,9143,0.002572269807584293,Ref.47_BF.ES.08.P1942.GQ372987,9143,0.9921577414295317,0.9699223449633599,1.0,234,8211,1,False
17+
MK114705.1,False,9411,0.14584270737492833,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9411,1.098065445564931,1.122622463075125,1.0,789,8793,6,False
18+
MK114856.1,False,9477,1.0,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9477,1.0485696645400289,1.0812493405085997,1.0,789,8793,4,False
19+
MK115009.1,False,9207,1.0,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9207,0.9965013377238114,1.0590854784403172,1.0,789,8793,3,False
20+
MK115387.1,False,9136,0.5436355526687852,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9136,0.9796254373327845,1.040936952714536,1.0,789,8793,2,False
21+
MK115491.1,True,9422,0.8961809048805741,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9422,1.0037044659394938,1.0299299511780937,1.0,789,8793,2,False
22+
MK116110.1,False,8967,0.07021438897893317,Ref.B.TH.90.BK132.AY173951,8967,0.9957759004001778,0.9972119995539199,0.9986220719027934,140,8123,3,False
23+
MK115527.1,True,9481,0.770862998910788,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9481,0.9867256637168141,1.0056956017297753,1.0,789,8793,2,False
24+
MK114997.1,False,9055,0.05560625344150194,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9055,0.9784935171846059,1.0516841524019878,1.0,789,8793,2,False
25+
MK115518.1,True,9537,0.6408152618300496,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9537,0.9847705289154147,0.9996854356715948,1.0,789,8793,3,False
26+
MK115065.1,False,9214,0.033954952452739495,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9214,1.0080263428689031,1.069459518124593,1.0,789,8793,6,False
27+
MK115464.1,False,9663,1.0,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9663,0.9838444124305412,0.9893407844354756,1.0,789,8793,2,False
28+
MK115530.1,True,9544,0.5812621948015355,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9544,0.9866227618851615,0.9992665549036044,1.0,789,8793,2,False
29+
MK115520.1,False,9589,0.5225247969864292,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9589,0.9786993208479111,0.987902805297737,1.012118940529735,789,8793,3,False
30+
MK115503.1,True,9617,0.42870398270204335,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9617,0.987034369211772,0.9953207861079338,1.0,789,8793,2,False
31+
MK115570.1,False,9485,0.7406166892211931,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9485,0.9866227618851615,1.0057986294148655,1.0,789,8793,2,False
32+
MK115509.1,True,9353,0.7883768413537747,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9353,0.9866227618851615,1.0197797498128942,1.0,789,8793,2,False
33+
MK115702.1,False,9098,0.1454272422215308,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9098,0.9874459765383824,1.0596834469114091,1.0198650674662668,789,8793,4,False
34+
MK115095.1,False,9137,1.0,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9137,0.9907388351512657,1.060085367188355,1.0,789,8793,2,False
35+
MK115490.1,True,9347,0.8875203448314265,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9347,0.9848734307470673,1.0204343639670483,1.0,789,8793,3,False
36+
MK115576.1,True,9266,0.8197662757563093,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9266,0.9917678534677917,1.0342110943233327,1.0,789,8793,3,False
37+
OQ092466,False,9686,0.3858261890626,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9686,1.1015641078411196,1.1192442700805285,1.0,789,8793,3,False
38+
OQ092463,False,9605,0.21628713708846803,Ref.B.TH.90.BK132.AY173951,9605,1.0529124055135617,0.9884435190005205,1.0,140,8123,2,False
39+
OQ092465,False,9659,0.02412789935966586,Ref.28_BF.BR.99.BREPM12817.DQ085874,9659,1.0429696287964005,0.9620043482762191,1.0,200,8207,2,False
40+
OQ092462,False,9714,0.10883643311676816,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9714,1.1306853261988064,1.1301214741610048,1.0,789,8793,3,False
41+
OQ092464,False,9556,0.006887768010151674,Ref.28_BF.BR.99.BREPM12817.DQ085874,9556,1.0427446569178853,0.9678735872750105,1.0,200,8207,2,False
42+
OQ092467,False,9936,0.6438715160567257,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.CfE,9936,1.1308911298621116,1.0962157809983897,1.0,789,8793,3,False

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