Online Supplement to "A mismatch between slow protein synthesis and fast environmental fluctuations determines tradeoffs in bacterial proteome allocation strategies"

Code, data, and figures accompanying "A mismatch between slow protein synthesis and fast environmental fluctuations determines tradeoffs in bacterial proteome allocation strategies" by Leron Perez and Jonas Cremer

Instructions for Reproducing Simulations and Code

1. Install Julia (the simulations for the paper used Julia 1.11.3) and the Pluto package
2. Download the supporting libraries
   • clone the growth simulation (AbxGrowthSims) and data analysis (RNA_over_Protein_analysis)* repositories to your computer
3. Follow the instructions in the pluto notebooks and have fun!

* - the RNA_over_Protein_analysis code is only used for a single figure in the supplementary

License Info

License is CC BY-ND-NC 4.0