GitHub - cropsinsilico/ePhotosynthesis

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
.github/workflows		.github/workflows
tests		tests
utils		utils
.gitattributes		.gitattributes
.gitignore		.gitignore
BF_AddTitle.m		BF_AddTitle.m
BF_Drive.m		BF_Drive.m
BF_Ini.m		BF_Ini.m
BF_MB.m		BF_MB.m
BF_Rate.m		BF_Rate.m
CA2.m		CA2.m
CA_AssignVmax.m		CA_AssignVmax.m
CA_CMDrive.m		CA_CMDrive.m
CA_CMIni.m		CA_CMIni.m
CA_DriveSelection.m		CA_DriveSelection.m
CA_PRi.m		CA_PRi.m
CA_PSDrive.m		CA_PSDrive.m
CA_PSI.m		CA_PSI.m
CA_PSPR_Out.m		CA_PSPR_Out.m
CA_PS_PRDrive.m		CA_PS_PRDrive.m
CA_PS_PRIni.m		CA_PS_PRIni.m
CA_Table.m		CA_Table.m
CA_User_Input.m		CA_User_Input.m
CA_trDynaPS_Drive.m		CA_trDynaPS_Drive.m
CIMCom.m		CIMCom.m
CM_Drive.m		CM_Drive.m
CM_Drive2.m		CM_Drive2.m
CM_Ini.m		CM_Ini.m
CM_OUT.m		CM_OUT.m
CM_mb.m		CM_mb.m
Condition.m		Condition.m
DynaPS_AddTitle.m		DynaPS_AddTitle.m
DynaPS_Drive.m		DynaPS_Drive.m
DynaPS_Graph.m		DynaPS_Graph.m
DynaPS_Ini.m		DynaPS_Ini.m
DynaPS_mb.m		DynaPS_mb.m
EPS_Drive.m		EPS_Drive.m
EPS_Graph.m		EPS_Graph.m
EPS_Ini.m		EPS_Ini.m
EPS_mb.m		EPS_mb.m
Ephotosynthesis model Users guide.docx		Ephotosynthesis model Users guide.docx
EphotosynthesisOnly.yml		EphotosynthesisOnly.yml
FIBF_Drive.m		FIBF_Drive.m
FIBF_Ini.m		FIBF_Ini.m
FIBF_MB.m		FIBF_MB.m
FIBF_Out.m		FIBF_Out.m
FI_AddTitle.m		FI_AddTitle.m
FI_Drive.m		FI_Drive.m
FI_Ini.m		FI_Ini.m
FI_MB.m		FI_MB.m
FI_Rate.m		FI_Rate.m
FPSReg_Drive.m		FPSReg_Drive.m
FPSReg_Graph.m		FPSReg_Graph.m
FPSReg_Ini.m		FPSReg_Ini.m
FPSReg_mb.m		FPSReg_mb.m
GenOut.m		GenOut.m
GenOut_AddTitle.m		GenOut_AddTitle.m
IniModelCom.m		IniModelCom.m
InitRatios.m		InitRatios.m
InputATPCost.txt		InputATPCost.txt
InputEvn.txt		InputEvn.txt
LICENSE		LICENSE
LRC.mat		LRC.mat
OutputRate.txt		OutputRate.txt
PCRDrive.m		PCRDrive.m
PRDrive.m		PRDrive.m
PRespTitle.m		PRespTitle.m
PRinitial.m		PRinitial.m
PRmb.m		PRmb.m
PRrate.m		PRrate.m
PSDrive.m		PSDrive.m
PSI.m		PSI.m
PSInitial.m		PSInitial.m
PSPR_Out.m		PSPR_Out.m
PSPR_SUCS_Drive.m		PSPR_SUCS_Drive.m
PSRate.m		PSRate.m
PSTitle.m		PSTitle.m
PS_OUT.m		PS_OUT.m
PS_PRDrive.m		PS_PRDrive.m
PS_PRIni.m		PS_PRIni.m
PS_PR_Titl.m		PS_PR_Titl.m
PS_PRmb.m		PS_PRmb.m
PSmb.m		PSmb.m
ParamSet.m		ParamSet.m
PreProcess.m		PreProcess.m
RA_Drive.m		RA_Drive.m
RA_Ini.m		RA_Ini.m
RA_mb.m		RA_mb.m
RROEA_AddTitle.m		RROEA_AddTitle.m
RROEA_Drive.m		RROEA_Drive.m
RROEA_Graph.m		RROEA_Graph.m
RROEA_Ini.m		RROEA_Ini.m
RROEA_Rate.m		RROEA_Rate.m
RROEA_mb.m		RROEA_mb.m
ReadMe.txt		ReadMe.txt
RedoxReg_Drive.m		RedoxReg_Drive.m
RedoxReg_FPercent.m		RedoxReg_FPercent.m
RedoxReg_Ini.m		RedoxReg_Ini.m
RedoxReg_Rate.m		RedoxReg_Rate.m
RedoxReg_mb.m		RedoxReg_mb.m

Repository files navigation

Read Me
Input files
InputEvn.txt
	Air CO2 concentration %ubar
	PAR % umol m-2 s-1
	SucPath:if SucPath=1 with sucrose synthesis(original)///if SucPath=0 No Sucrose synthesis,only T3P output
InputATPCost
	ATPCost:Extra ATP cost from FBA model % umol m-2 s-1

Output
    Result(1)=Vc
    Result(2)=Vo
    Result(3)=Vpgasink
    Result(4)=VT3P
    Result(5)=VStarch
    Result(6)=Vt_glycerate
    Result(7)=Vt_glycolate