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Code and Software from David Spencer's lab

4 followers
United States of America
http://davidspencerlab.org
dspencerlab@gmail.com

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nf-core-wgsnano nf-core-wgsnano Public

Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing

Nextflow 6 6
nf-core-hic nf-core-hic Public

Pipeline for Hi-C data analysis

Nextflow 2 1
dragenflow dragenflow Public

Nextflow 2
methfast methfast Public

Simple c program for manipulating bed-like methylation files

C

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Showing 10 of 25 repositories

epibench Public
EpiBench is a software tool designed for predicting DNA methylation levels using genomic sequence data and histone modification marks. It employs a multi-branch CNN architecture tailored for integrating these data types to achieve high prediction accuracy.

dhslab/epibench’s past year of commit activity

Python 1 MIT 0 0 0 Updated Oct 31, 2025
dragenflow Public

dhslab/dragenflow’s past year of commit activity

Nextflow 0 MIT 2 0 0 Updated Oct 30, 2025
nf-core-scge Public
Nextflow implementation of scge workflow

dhslab/nf-core-scge’s past year of commit activity

Python 1 MIT 1 2 2 Updated Oct 21, 2025
dhslab-docker-images Public
Docker images for the Spencer lab

dhslab/dhslab-docker-images’s past year of commit activity

Dockerfile 2 MIT 3 1 2 Updated Oct 6, 2025
nf-core-wgsnano Public
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing

dhslab/nf-core-wgsnano’s past year of commit activity

Nextflow 6 MIT 6 0 0 Updated Oct 6, 2025
methtools Public Forked from m-mahgoub/methtools
Python toolkit for DNA methylation analysis,

dhslab/methtools’s past year of commit activity

Python 0 1 0 0 Updated Sep 10, 2025
covfast Public
Small c program to calculate coverage from a bam/cram over bed intervals

dhslab/covfast’s past year of commit activity

C 0 MIT 0 0 0 Updated Aug 7, 2025
dhsrmethtools Public
R functions for methylation analysis

dhslab/dhsrmethtools’s past year of commit activity

R 0 0 0 0 Updated Jul 11, 2025
dhslab-archive Public
Python scripts to perform data archiving

dhslab/dhslab-archive’s past year of commit activity

Python 0 MIT 0 0 0 Updated Jun 29, 2025
nf-core-scge-abonney Public Forked from dhslab/nf-core-scge
Nextflow implementation of scge workflow with Enhanced Reporting

dhslab/nf-core-scge-abonney’s past year of commit activity

Nextflow 0 MIT 1 0 0 Updated Jun 26, 2025

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