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enable building stochastic_physics using CMake #3

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enable building stochastic_physics using CMake #3

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881e7c2
update src/core_atmosphere/CMakeLists.txt to build stochastic_physics…
guoqing-noaa Feb 28, 2026
acd1bbc
update ursa.intel.lua to include mkl and NetCDF
guoqing-noaa Feb 28, 2026
77a404e
updae the stochastic_physics module to use mpi instead of mpi_f08
guoqing-noaa Feb 28, 2026
26fc04c
update hera.intel.lua
guoqing-noaa Feb 28, 2026
dc1baeb
update derecho.intel.lua
guoqing-noaa Feb 28, 2026
4e2b618
use mpas_fortran_target() in CMakeLists.txt
guoqing-noaa Feb 28, 2026
399589b
compile stochastic physics on gaeac6
guoqing-noaa Mar 5, 2026
1bc77cb
compile stochastic physics on orion/hercules
guoqing-noaa Mar 5, 2026
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2 changes: 1 addition & 1 deletion .gitmodules
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Original file line number Diff line number Diff line change
Expand Up @@ -18,4 +18,4 @@
url = https://github.com/NOAA-GSL/SMOKE.git
[submodule "src/core_atmosphere/stochastic_physics"]
path = src/core_atmosphere/stochastic_physics
url = https://github.com/dtcenter/stochastic_physics.git
url = https://github.com/guoqing-noaa/stochastic_physics.git
5 changes: 5 additions & 0 deletions modulefiles/mpas/derecho.intel.lua
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Expand Up @@ -7,15 +7,20 @@ prepend_path("MODULEPATH", '/glade/work/epicufsrt/contrib/spack-stack/derecho/sp

load("stack-oneapi/2024.2.1")
load("stack-cray-mpich/8.1.29")
load("intel-oneapi-mkl/2024.2.2")
load("cmake/3.27.9")
load("parallel-netcdf/1.12.3")
load("parallelio/2.6.2")

if mode() == "load" then
setenv("PNETCDF", os.getenv("parallel_netcdf_ROOT"))
setenv("NetCDF_C_ROOT", os.getenv("netcdf_c_ROOT"))
setenv("NetCDF_FORTRAN_ROOT", os.getenv("netcdf_fortran_ROOT"))
end
if mode() == "unload" then
unsetenv("PNETCDF")
unsetenv("NetCDF_C_ROOT")
unsetenv("NetCDF_FORTRAN_ROOT")
end

setenv("CMAKE_C_COMPILER", "mpicc")
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5 changes: 5 additions & 0 deletions modulefiles/mpas/gaeac6.intel.lua
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Expand Up @@ -7,15 +7,20 @@ prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/c6/spack-stack-1.9.3/env

load("stack-oneapi/2024.2.1")
load("stack-cray-mpich/8.1.32")
load("intel-oneapi-mkl/2023.2.0")
load("cmake/3.27.9")
load("parallel-netcdf/1.12.3")
load("parallelio/2.6.2")

if mode() == "load" then
setenv("PNETCDF", os.getenv("parallel_netcdf_ROOT"))
setenv("NetCDF_C_ROOT", os.getenv("netcdf_c_ROOT"))
setenv("NetCDF_FORTRAN_ROOT", os.getenv("netcdf_fortran_ROOT"))
end
if mode() == "unload" then
unsetenv("PNETCDF")
unsetenv("NetCDF_C_ROOT")
unsetenv("NetCDF_FORTRAN_ROOT")
end

setenv("CMAKE_C_COMPILER", "mpicc")
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6 changes: 6 additions & 0 deletions modulefiles/mpas/hera.intel.lua
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Expand Up @@ -7,15 +7,21 @@ prepend_path("MODULEPATH","/contrib/spack-stack/spack-stack-1.9.3/envs/ue-oneapi

load("stack-oneapi/2024.2.1")
load("stack-intel-oneapi-mpi/2021.13")
load("mkl/2024.2.1")

load("cmake/3.27.9")
load("parallel-netcdf/1.12.3")
load("parallelio/2.6.2")

if mode() == "load" then
setenv("PNETCDF", os.getenv("parallel_netcdf_ROOT"))
setenv("NetCDF_C_ROOT", os.getenv("netcdf_c_ROOT"))
setenv("NetCDF_FORTRAN_ROOT", os.getenv("netcdf_fortran_ROOT"))
end
if mode() == "unload" then
unsetenv("PNETCDF")
unsetenv("NetCDF_C_ROOT")
unsetenv("NetCDF_FORTRAN_ROOT")
end

setenv("CMAKE_C_COMPILER", "mpiicc")
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5 changes: 5 additions & 0 deletions modulefiles/mpas/orion.intel.lua
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Expand Up @@ -7,15 +7,20 @@ prepend_path("MODULEPATH", "/apps/contrib/spack-stack/spack-stack-1.9.3/envs/ue-

load("stack-oneapi/2024.2.1")
load("stack-intel-oneapi-mpi/2021.13")
load("intel-oneapi-mkl/2024.2.1")
load("cmake/3.27.9")
load("parallel-netcdf/1.12.3")
load("parallelio/2.6.2")

if mode() == "load" then
setenv("PNETCDF", os.getenv("parallel_netcdf_ROOT"))
setenv("NetCDF_C_ROOT", os.getenv("netcdf_c_ROOT"))
setenv("NetCDF_FORTRAN_ROOT", os.getenv("netcdf_fortran_ROOT"))
end
if mode() == "unload" then
unsetenv("PNETCDF")
unsetenv("NetCDF_C_ROOT")
unsetenv("NetCDF_FORTRAN_ROOT")
end

setenv("CMAKE_C_COMPILER", "mpiicc")
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6 changes: 5 additions & 1 deletion modulefiles/mpas/ursa.intel.lua
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Expand Up @@ -7,6 +7,7 @@ prepend_path("MODULEPATH", "/contrib/spack-stack/spack-stack-1.9.3/envs/ue-oneap

load("stack-oneapi/2024.2.1")
load("stack-intel-oneapi-mpi/2021.13")
load("intel-oneapi-mkl/2024.2.1")

load("cmake/3.27.9")
load("parallel-netcdf/1.12.3")
Expand All @@ -17,9 +18,12 @@ setenv("CMAKE_CXX_COMPILER", "mpiicpc")
setenv("CMAKE_Fortran_COMPILER", "mpiifort")

if mode() == "load" then
--setenv("PNETCDF", os.getenv("PARALLEL_NETCDF_ROOT"))
setenv("PNETCDF", os.getenv("parallel_netcdf_ROOT"))
setenv("NetCDF_C_ROOT", os.getenv("netcdf_c_ROOT"))
setenv("NetCDF_FORTRAN_ROOT", os.getenv("netcdf_fortran_ROOT"))
end
if mode() == "unload" then
unsetenv("PNETCDF")
unsetenv("NetCDF_C_ROOT")
unsetenv("NetCDF_FORTRAN_ROOT")
end
34 changes: 34 additions & 0 deletions src/core_atmosphere/CMakeLists.txt
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Expand Up @@ -139,6 +139,39 @@ set(ATMOSPHERE_CORE_PHYSICS_SMOKE_SOURCES
)
list(TRANSFORM ATMOSPHERE_CORE_PHYSICS_SMOKE_SOURCES PREPEND physics/physics_noaa/SMOKE/)

# build stochastic_physics as a library
set(ATMOSPHERE_CORE_STOCHASTIC_PHYSICS_SOURCES
kinddef.F90
mpi_wrapper.F90
plumes.F90
mersenne_twister.F90
random_numbers.F90
stochy_namelist_def.F90
compns_stochy.F90
stochy_internal_state_mod.F90
spectral_transforms.F90
stochastic_physics.F90
stochy_patterngenerator.F90
stochy_data_mod.F90
stochy_nml_rec.F90
get_stochy_pattern.F90
lndp_apply_perts.F90
stochastic_physics_mpas.F
)
list(TRANSFORM ATMOSPHERE_CORE_STOCHASTIC_PHYSICS_SOURCES PREPEND stochastic_physics/)
add_library(stochastic_physics ${ATMOSPHERE_CORE_STOCHASTIC_PHYSICS_SOURCES})
mpas_fortran_target(stochastic_physics)
target_compile_definitions(stochastic_physics PRIVATE INTERNAL_FILE_NML)
if(NOT MPAS_DOUBLE_PRECISION)
target_compile_definitions(stochastic_physics PRIVATE CCPP_32BIT)
endif()
find_package(BLAS REQUIRED)
find_package(NetCDF REQUIRED COMPONENTS Fortran C)
target_link_libraries(stochastic_physics PUBLIC MPI::MPI_Fortran framework ${BLAS_LIBRARIES} NetCDF::NetCDF_Fortran NetCDF::NetCDF_C)
install(TARGETS stochastic_physics EXPORT ${PROJECT_NAME}ExportsCore
ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}
LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR})

set(ATMOSPHERE_CORE_PHYSICS_MMM_DIR ${CMAKE_CURRENT_SOURCE_DIR}/physics/physics_mmm)

if(NOT EXISTS ${ATMOSPHERE_CORE_PHYSICS_MMM_DIR})
Expand Down Expand Up @@ -503,6 +536,7 @@ if (${DO_PHYSICS})
list(APPEND CORE_ATMOSPHERE_COMPILE_DEFINITIONS DO_PHYSICS)
endif ()
target_compile_definitions(core_atmosphere PRIVATE ${CORE_ATMOSPHERE_COMPILE_DEFINITIONS})
target_link_libraries(core_atmosphere PUBLIC stochastic_physics)
set_MPAS_DEBUG_flag(core_atmosphere)
mpas_core_target(CORE atmosphere TARGET core_atmosphere INCLUDES ${ATMOSPHERE_CORE_INCLUDES})

Expand Down
2 changes: 1 addition & 1 deletion src/core_atmosphere/stochastic_physics
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Submodule stochastic_physics updated 3 files
+4 −4 mpi_wrapper.F90
+2 −2 stochastic_physics.F90
+2 −2 stochastic_physics_mpas.F