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segmenter: Use csv over pandas#848

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ArthurTlprt wants to merge 3 commits intofairscope:mainfrom
ArthurTlprt:use_csv_over_pandas
Open

segmenter: Use csv over pandas#848
ArthurTlprt wants to merge 3 commits intofairscope:mainfrom
ArthurTlprt:use_csv_over_pandas

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@ArthurTlprt
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Hi @sonnyp,

I finally made a PR from a fork.

Here is the commit.

I'm not sure how I can test.

Arthur

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@sonnyp sonnyp left a comment

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Hello,

Please drop unrelated changes

For testing, do you have a PlanktoScope at your disposal?

Don't hesitate to reach out on Slack if you need help https://www.planktoscope.org/join

@sonnyp sonnyp changed the title Use csv over pandas segmenter: Use csv over pandas Feb 2, 2026
@sonnyp
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sonnyp commented Feb 2, 2026

I've made the segmenter able to run locally (without a PlanktoScope) - you will have to merge main into this branch.

https://github.com/PlanktoScope/PlanktoScope/tree/main/segmenter#running-on-your-computer

Once you have it running

  1. download this example dataset https://drive.google.com/drive/folders/1g6OPaUIhYkU2FPqtIK4AW6U4FYmhFxuw
  2. unzip in PlanktoScope/data/img (PlanktoScope refers to the clone of the repo)

then you can control the segmenter with

cd segmenter
node test.js

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2 participants