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lib: Make listSegmentations return ecotaxa export #914

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lib: Make listSegmentations return ecotaxa export #914

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19 changes: 18 additions & 1 deletion lib/db.js
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ import {
stat,
} from "fs/promises"
import { parse } from "csv-parse"
import { createReadStream } from "fs"
import { createReadStream, exists } from "fs"

export const DATA_PATH = "/home/pi/data"
export const PATH_ACQUISITION = join(DATA_PATH, "img")
Expand Down Expand Up @@ -205,6 +205,20 @@ async function getSegmentationFromPath(path) {
const acquisition_id =
tsv_row.acq_id.split(sample_id + "_")[1] || tsv_row.acq_id

let ecotaxa_export_relative_path = join(
"export/ecotaxa",
`ecotaxa_${acquisition_id}.zip`,
)
console.log(ecotaxa_export_relative_path)
let ecotaxa_export_exists = false
try {
await access(join(DATA_PATH, ecotaxa_export_relative_path), constants.F_OK)
ecotaxa_export_exists = true
} catch (err) {
if (err.code !== "ENOENT") throw err
ecotaxa_export_exists = false
}

const segmentation = {
project_name,
sample_id,
Expand All @@ -213,6 +227,9 @@ async function getSegmentationFromPath(path) {
path,
gallery: getGalleryPath(path),
date: stats.birthtime.toISOString(),
ecotaxa_export: ecotaxa_export_exists
? join("/api/files/", path_relative)
: null,
}

return segmentation
Expand Down