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Force removal of ".gejobrunner" directory created by GEJobRunner class

enhancement

job runners

Status: Open.

#225 In fls-bioinformatics-core/genomics;

· pjbriggs opened on Jan 10, 2025

Add automatic detection of Illumina sequencer type from run name

enhancement

Illumina

Status: Open.

#222 In fls-bioinformatics-core/genomics;

· pjbriggs opened on Dec 17, 2024

Add support for SampleSheet v2 to 'SampleSheet' class in bcftbx.IlluminaData

Illumina

new-feature

Status: Open.

#184 In fls-bioinformatics-core/genomics;

· pjbriggs opened on Aug 19, 2021

bcftbx/TabFile: inconsistency when appending columns to TabFile with empty header

bug

tabfile

Status: Open.

#179 In fls-bioinformatics-core/genomics;

· pjbriggs opened on Nov 24, 2020

Rename 'SimpleJobRunner' to 'LocalJobRunner'

job runners

refactoring

Status: Open.

#175 In fls-bioinformatics-core/genomics;

· pjbriggs opened on Sep 16, 2020

GEJobRunner handle jobs which don't finish cleanly (e.g. killed by qmaster)

bug

job runners

Status: Open.

#111 In fls-bioinformatics-core/genomics;

· pjbriggs opened on Aug 15, 2019

Make available via the Python Package Index (PyPi)

enhancement

packaging

Status: Open.

#98 In fls-bioinformatics-core/genomics;

· golharam opened on Jun 14, 2019

Refactor bcftbx library to reorganise modules into subdirectories

enhancement

refactoring

Status: Open.

#33 In fls-bioinformatics-core/genomics;

· pjbriggs opened on Nov 2, 2016

Update to bcftbx docstrings to work with sphinx autodoc

documentation

Status: Open.

#11 In fls-bioinformatics-core/genomics;

· pjbriggs opened on Apr 16, 2015