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Dev to master, with regions and spatial indexing.#387

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alhom wants to merge 139 commits intomasterfrom
dev
Open

Dev to master, with regions and spatial indexing.#387
alhom wants to merge 139 commits intomasterfrom
dev

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@alhom alhom commented Dec 8, 2025

... this will need a bit thought as dev had gotten a bit stale.

alhom and others added 30 commits May 29, 2024 12:59
…an be accessed from the original vlsv file that has a linked sidecar file
… of yt, remove unnecessary imports and function
… takes a vlsvfile name and keyword arguments and returns magnetopause as triangle mesh vertices and faces (3d) or array (2d). Remove unnecessary functions, change units from RE to m.
jreimi and others added 21 commits August 29, 2025 11:27
missing endline
Cache files framework, spatial indexing for SpatialGrid reads. Also includes file-caching infra for AMR neighborhood stencils (via pickle[!], to be anyway redone for performance, and this currently needs to be driven via an external script). There definitely are things to consolidate further, but to get the performance benefits available this goes to dev now. Propagation to master branch is pending testpackage implementation, at least.
Region classification - into dev as well, these prototypes are already useful!
Bring dev up to date with master
bboxes = self.__reader.get_mesh_domain_extents("SpatialGrid")
bboxes = bboxes.reshape((-1,6), order='C')

self.__rtree_index = rtree.index.Index(self.__rtree_idxfile[:-4],properties=self.__rtree_properties, interleaved=False)
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This will need a custom storage implementation/fix in the rtree package.

alhom and others added 8 commits January 14, 2026 17:30
Removed vtk dependency from optional dependencies and added it to the main dependencies.
... if that helps with stability...
Removed 'analysator[vtk]' from optional dependencies.
Fixed the folder path for get_cache_folder
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3 participants