Skip to content

Conversation

@guerler
Copy link
Contributor

@guerler guerler commented Oct 30, 2025

Resolves the reference loading issue by listing only fasta-index files and disabling 2bit reference genomes in IGV, addressing #21183. The full fix is under discussion in #21008 and may take longer to implement.

How to test the changes?

(Select all options that apply)

  • I've included appropriate automated tests.
  • This is a refactoring of components with existing test coverage.
  • Instructions for manual testing are as follows:
    1. [add testing steps and prerequisites here if you didn't write automated tests covering all your changes]

License

  • I agree to license these and all my past contributions to the core galaxy codebase under the MIT license.

@guerler guerler added this to the 25.1 milestone Oct 30, 2025
@guerler guerler marked this pull request as ready for review October 30, 2025 19:10
@mvdbeek
Copy link
Member

mvdbeek commented Oct 30, 2025

I don't think this needs urgent fixing ? The only site deploying this is usegalaxy.org and we have it in the usegalaxy_25.1 branch

@guerler
Copy link
Contributor Author

guerler commented Oct 30, 2025

Makes sense, closing this then. We should have a fix to re-enable 2bit within a few days. Thanks.

@guerler guerler closed this Oct 30, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants