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Add bio.tools for t2t report #623

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Add bio.tools for t2t report #623

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7ac435b
Update .shed.yml to include correct repository url
EngyNasr Mar 12, 2024
aa1f2b8
Update t2t_report.xml to include the biotools tool id
EngyNasr Mar 12, 2024
a074320
Update .tt_skip
bgruening May 17, 2024
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1 change: 0 additions & 1 deletion .tt_skip
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,6 @@ tool_collections/taxonomy/gi2taxonomy
tool_collections/taxonomy/lca_wrapper
tool_collections/taxonomy/poisson2test
tool_collections/taxonomy/t2ps
tool_collections/taxonomy/t2t_report
tool_collections/vcftools/vcftools_annotate
tool_collections/vcftools/vcftools_compare
tool_collections/vcftools/vcftools_isec
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2 changes: 1 addition & 1 deletion tool_collections/taxonomy/t2t_report/.shed.yml
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Expand Up @@ -7,5 +7,5 @@ long_description: |
name: t2t_report
owner: devteam
homepage_url: https://bitbucket.org/natefoo/taxonomy
remote_repository_url: https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/taxonomy/t2t_report
remote_repository_url: https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/t2t_report
type: unrestricted
3 changes: 3 additions & 0 deletions tool_collections/taxonomy/t2t_report/t2t_report.xml
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@@ -1,5 +1,8 @@
<tool id="t2t_report" name="Summarize taxonomy" version="1.0.0">
<description></description>
<xrefs>
<xref type="bio.tools">t2t_report</xref>
</xrefs>
<requirements>
<requirement type="package" version="1.0.0">taxonomy</requirement>
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@bernt-matthias bernt-matthias Mar 12, 2024

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Wondering why the tests don't run...

Guess the tool won't work anymore. there is no conda requirement (at least for the software in question .. https://anaconda.org/bioconda/taxonomy seems to be something else).

ping @natefoo

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@natefoo natefoo Mar 20, 2024

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I managed to find a copy of this repository and converted it to git: https://github.com/natefoo/taxonomy

However as noted in the README, the canonical source is https://github.com/spond/gb_taxonomy_tools

</requirements>
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