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hash123shaikh/README.md

Hasan Shaikh - Medical Imaging & AI for Oncology Researcher

πŸŽ“ M.Tech in Computer Engineering | Aligarh Muslim University (CGPA: 8.80/10)
πŸ₯ Clinical Data Scientist @ QIRAIL Lab, CMC Vellore
🧠 Radiomics β€’ Auto-Segmentation β€’ Adaptive Radiotherapy β€’ Cancer AI β€’ Uncertainty Quantification


πŸ‘‹ About Me

I am a clinical data scientist and medical imaging researcher working at the Quantitative Imaging Research and Artificial Intelligence Lab (QIRAIL), Department of Radiation Oncology, Christian Medical College, Vellore β€” one of India's leading cancer centers.

My work focuses on building AI pipelines that help oncologists make smarter, faster, and more personalized treatment decisions for head and neck cancer patients.

My research primarily focuses on:

  • Radiomics-Based Cancer Outcome Prediction
  • Automated Tumor Segmentation (3D CNNs, nnU-Net)
  • Adaptive Radiotherapy & Treatment Planning Automation
  • Uncertainty Quantification in Clinical AI
  • DICOM/PACS Engineering & Clinical Data Pipelines
  • Multimodal Deep Learning for Oncology

I have authored and co-authored multiple papers, including a Poster Highlight accepted at ESTRO 2026 (European Society for Radiotherapy and Oncology), a Springer LNEE conference paper, a medRxiv preprint, and an Elsevier book chapter. I also organize hands-on radiomics and auto-segmentation workshops for clinicians and researchers.

I genuinely enjoy talking with people β€” researchers, clinicians, or anyone curious about AI in healthcare. Feel free to reach out anytime.

🎯 I am actively looking for PhD positions in medical imaging, radiation oncology AI, uncertainty quantification, adaptive radiotherapy, and cancer research.


πŸ”¬ Publications & Research

Conference Papers

  • πŸ“„ Development and Validation of a Prospective Radiomics-Clinical Signature for Locoregional Recurrence in Locally Advanced Head and Neck Cancer
    Balu Krishna S, Amal Joseph Varghese, Hasan Shaikh et al.
    European Society for Radiotherapy and Oncology (ESTRO 2026), Stockholm, Sweden β€” βœ… Accepted as Poster Highlight

  • πŸ“„ Metaheuristic-Driven Machine Learning Pipelines for Radiomics-Based Prediction of Locoregional Recurrence in Head and Neck Cancer
    Hasan Shaikh, Balu Krishna S, Amal Joseph Varghese et al.
    Lecture Notes in Electrical Engineering, Springer Nature β€” AIHC 2025, NIT Calicut β€” βœ… Accepted

Preprints

Book Chapters

Poster Presentations

  • πŸͺ§ "Before We Treat, Can We Tell? A Locoregional Recurrence Signature in Head & Neck"
    15th Annual Research Day, CMC Vellore, 2025

  • πŸͺ§ "Can CT Radiomics Predict Recurrence in Head and Neck Cancer? Early Results from a Prospective Imaging Trial"
    14th Annual Research Day, CMC Vellore, 2024


🏫 Workshops Organized

  • πŸ› οΈ 2nd Workshop on Radiomics and Auto-Segmentation (March 2026)
    Dept. of Radiation Oncology & QIRAIL Lab, CMC Vellore β€” Hands-on training for clinicians and researchers on radiomics pipelines and auto-segmentation tools.

  • πŸ› οΈ 1st Workshop on Radiomics and Auto-Segmentation (November 14–15, 2024)
    Dept. of Radiation Oncology & QIRAIL Lab, CMC Vellore β€” Certificate


🎯 Looking for a PhD Position

I'm actively applying for PhD positions. If your lab works on any of the following, I'd love to connect:

  • 🧠 Medical image analysis & segmentation
  • 🎯 Radiomics & cancer outcome prediction
  • πŸ“ Uncertainty quantification in clinical AI
  • βš™οΈ Adaptive radiotherapy & treatment planning automation
  • πŸ” Auto-segmentation for radiation oncology workflows
  • 🧬 Multimodal learning for cancer research

πŸ› οΈ Tools I Work With

Python PyRadiomics nnUNet MedSAM Scikit-learn Pandas Docker Git

Medical Imaging: 3D Slicer Β· ITK-SNAP Β· Orthanc PACS Β· XNAT Β· DICOM Β· NIfTI
ML/DL: TensorFlow Β· Keras Β· scikit-learn Β· nnU-Net
Infra: Docker Β· GitHub Β· PostgreSQL Β· Bash


πŸ™‹ A Little More About Me

  • πŸ’¬ I love talking with people β€” researchers, clinicians, engineers, or anyone curious about AI in healthcare. Just message me.
  • πŸ€– I believe AI will eventually automate radiation oncology end-to-end β€” radiation therapy delivery, treatment planning, auto-segmentation, adaptive radiotherapy, and a fully paperless AI-driven EMR. We're close.
  • 🌍 The biggest impact of medical AI won't be in well-resourced hospitals β€” it'll be in under-resourced settings where expert clinicians are scarce.
  • πŸ“ Based in Vellore, Tamil Nadu, India

πŸ“« Connect with Me

I'm always open to conversations about research, PhD opportunities, or collaborations.

LinkedIn Portfolio Google Scholar ORCID Email


GitHub streak stats


πŸ’‘ "Making radiotherapy smarter, one pipeline at a time."

Pinned Loading

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    A perfect guide on how to prevent and remove `.env` files or sensitive data from GitHUb repositries. Includes cleanup commands, best practics, and sample files for safe code sharing.

  2. Master-Thesis Master-Thesis Public

    Multimodal deep learning for cancer survival prediction (91.2% accuracy, 79.8% sensitivity) using Gated Attention CNNs + Random Forest

    Python

  3. Reproducibility-of-HNC_CNN Reproducibility-of-HNC_CNN Public

    Python

  4. hnc-radiomics hnc-radiomics Public

    IBSI-compliant radiomics feature extraction pipeline for head and neck cancer CT imaging. Automated quantitative biomarker analysis from DICOM RT structure sets. Extracts 100+ shape, first-order, a…

    Jupyter Notebook