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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 809 162

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 176 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 323 54

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 166 33

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 671 107

Repositories

Showing 10 of 383 repositories
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 4 Updated Oct 28, 2025
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 0 0 7 Updated Oct 28, 2025
  • udi-chat Public

    For experimenting with chat based interface for the Universal Discovery Interface.

    hms-dbmi/udi-chat’s past year of commit activity
    Vue 0 MIT 0 0 6 Updated Oct 28, 2025
  • UDIAgent Public Forked from mims-harvard/TxAgent

    UDIAgent: Inference for generating visualizations from natural language prompts

    hms-dbmi/UDIAgent’s past year of commit activity
    Python 0 MIT 84 0 0 Updated Oct 28, 2025
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 0 Updated Oct 28, 2025
  • picsure-dictionary-etl Public
    hms-dbmi/picsure-dictionary-etl’s past year of commit activity
    Java 1 Apache-2.0 0 0 3 Updated Oct 28, 2025
  • hypatio-app Public
    hms-dbmi/hypatio-app’s past year of commit activity
    Python 4 1 0 7 Updated Oct 28, 2025
  • dbmi-fileservice Public
    hms-dbmi/dbmi-fileservice’s past year of commit activity
    Python 2 0 0 4 Updated Oct 28, 2025
  • pic-sure-metadata-curation Public

    Parse and generate variable-level data to be exposed through the search interface.

    hms-dbmi/pic-sure-metadata-curation’s past year of commit activity
    SAS 2 Apache-2.0 2 0 0 Updated Oct 28, 2025
  • picsure-dictionary Public Forked from Luke-Sikina/picsure-search-refinement
    hms-dbmi/picsure-dictionary’s past year of commit activity
    Java 0 Apache-2.0 1 0 1 Updated Oct 28, 2025
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