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hoogenboom-group

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https://www.hoogenboomlab.org/

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PSF-Extractor PSF-Extractor Public

Characterize the PSF of an optical setup

Jupyter Notebook 9
SF SF Public

Depth-dependent axial rescaling of 3D fluorescence microscopy data sets

Jupyter Notebook 4 1

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Showing 10 of 21 repositories

em-infrastructure Public
Documentation and configuration for Electron Microscopy server infrastructure

hoogenboom-group/em-infrastructure’s past year of commit activity

Shell 0 MIT 0 0 0 Updated Feb 10, 2026
scripted-render-pipeline Public
automated pipeline interfacing with render-ws rest api

hoogenboom-group/scripted-render-pipeline’s past year of commit activity

Python 0 GPL-3.0 0 6 (1 issue needs help) 2 Updated Jan 30, 2026
PSF-Extractor Public
Characterize the PSF of an optical setup

hoogenboom-group/PSF-Extractor’s past year of commit activity

Jupyter Notebook 9 CC-BY-4.0 0 3 0 Updated Jul 7, 2025
iCAT-workflow Public
Post-processing workflow for integrated correlative array tomography (iCAT)

hoogenboom-group/iCAT-workflow’s past year of commit activity

Jupyter Notebook 2 CC-BY-4.0 0 3 0 Updated Jun 27, 2025
interactive-render-workflow Public
Interactive workflow for aligning volume electron microscopy datasets.

hoogenboom-group/interactive-render-workflow’s past year of commit activity

Jupyter Notebook 1 GPL-3.0 0 4 0 Updated May 9, 2025
napari-webknossos-reader Public
Napari plugin for reading local and remote webknossos datasets

hoogenboom-group/napari-webknossos-reader’s past year of commit activity

Python 0 GPL-3.0 0 3 0 Updated Apr 15, 2025
protocol-paper-ENZEL Public

hoogenboom-group/protocol-paper-ENZEL’s past year of commit activity

Python 0 CC-BY-4.0 0 0 0 Updated Feb 26, 2025
fastem-sofima Public
Scable Optical Flow-based Image Alignment (SOFIMA) of FAST-EM datasets.

hoogenboom-group/fastem-sofima’s past year of commit activity

Jupyter Notebook 0 GPL-3.0 0 1 (1 issue needs help) 0 Updated Nov 29, 2024
mitonet-seg Public
MitoNet inference on Volume EM datasets

hoogenboom-group/mitonet-seg’s past year of commit activity

Python 0 0 1 0 Updated Nov 28, 2024
catmaid-docker Public Forked from catmaid/catmaid-docker
Docker compose application for CATMAID

hoogenboom-group/catmaid-docker’s past year of commit activity

Shell 0 3 0 0 Updated Nov 1, 2024

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