Skip to content

iichelhadi/NGS

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

6 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

NGS Pipelines

Custom RNA-seq, ChIP-seq, and QC pipelines developed by Elhadi Iich (PhD)
Affiliation: NUS Yong Loo Lin School of Medicine
Contact: iichelhadi@gmail.com

Structure

  • RNA_seq_pipeline/: Paired-end RNA-seq pipeline using STAR and featureCounts
  • ChIP_seq_pipeline/: ChIP-seq pipeline using TrimGalore, Bowtie2, samtools, and bamCoverage
  • QC_pipeline/: FastQC and MultiQC summarization

License

This repository is not open source.
Redistribution, modification, or reuse without permission is prohibited.

Attribution is required in all derivative works or publications.

About

Custom RNA-seq, ChIP-seq, and QC pipelines by Elhadi Iich (PhD)

Resources

License

Stars

Watchers

Forks

Packages

 
 
 

Contributors

Languages