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Epivitae merged 4 commits into from
Jan 17, 2026
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Ria, edit site page dois #409

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Epivitae Jan 17, 2026
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10 changes: 5 additions & 5 deletions _pages/people/Epivitae.md
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Expand Up @@ -41,8 +41,8 @@ The easiest way to install and stay up-to-date is via the **Fiji Update Site**:

| Plugin | Description | Links |
| :--- | :--- | :--- |
| **RIA-J**<br>(Ratio Imaging Analyzer) | **Publication-grade ratiometric analysis.**<br>Features background subtraction, pixel-by-pixel ratio calculation, and IMD display mode. | [Wiki](https://imagej.net/plugins/ria-j) / [GitHub](https://github.com/Epivitae/RIA-J) |
| **FIA**<br>(Fluorescence Image Aligner) | **Motion correction & Registration.**<br>Robustly stabilizes live-animal time-lapse datasets (Global & Dense Flow) before quantification. | [GitHub](https://github.com/Epivitae/FIA-Fluorescence-Image-Aligner) |
| **NIA**<br>(Neural Inference Assistant) | **Zero-setup AI denoising.**<br>Runs deep learning models (DnCNN) directly in Java via ONNX Runtime. No Python, no CUDA required. Supports 5D hyperstacks. | [GitHub](https://github.com/Epivitae/NIA-Denoise) / [DOI](https://doi.org/10.5281/zenodo.18244343) |
| **MIA**<br>(Metadata Inspection Analyzer) | **Metadata explorer.**<br>Instantly extracts hidden tags (Olympus .oir, OME-XML) and exports summaries to Excel/CSV. | [GitHub](https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer) |
| **WinMan**<br>(Window Manager) | **Workspace accelerator.**<br>Efficiently manages, tiles, and filters multiple image windows to keep your workspace clean. | [GitHub](https://github.com/Epivitae/WinMan) |
| **RIA-J**<br>(Ratio Imaging Analyzer) | **Publication-grade ratiometric analysis.**<br>Features background subtraction, pixel-by-pixel ratio calculation, and IMD display mode. | [Wiki](https://imagej.net/plugins/biosensor/ria-j) [GitHub](https://github.com/Epivitae/RIA-J) [DOI](https://doi.org/10.5281/zenodo.18204761)|
| **FIA**<br>(Fluorescence Image Aligner) | **Motion correction & Registration.**<br>Robustly stabilizes live-animal time-lapse datasets (Global & Dense Flow) before quantification. | [Wiki](https://imagej.net/plugins/biosensor/fia) [GitHub](https://github.com/Epivitae/FIA-Fluorescence-Image-Aligner) [DOI](https://doi.org/10.5281/zenodo.18206931) |
| **NIA**<br>(Neural Inference Assistant) | **Zero-setup AI denoising.**<br>Runs deep learning models (DnCNN) directly in Java via ONNX Runtime. No Python, no CUDA required. Supports 5D hyperstacks. | [Wiki](https://imagej.net/plugins/biosensor/nia) [GitHub](https://github.com/Epivitae/NIA-Denoise) [DOI](https://doi.org/10.5281/zenodo.18244343) |
| **MIA**<br>(Metadata Inspection Analyzer) | **Metadata explorer.**<br>Instantly extracts hidden tags (Olympus .oir, OME-XML) and exports summaries to Excel/CSV. |[Wiki](https://imagej.net/plugins/biosensor/mia) [GitHub](https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer) [DOI](https://doi.org/10.5281/zenodo.18280807) |
| **WinMan**<br>(Window Manager) | **Workspace accelerator.**<br>Efficiently manages, tiles, and filters multiple image windows to keep your workspace clean. | [Wiki](https://imagej.net/plugins/biosensor/winman) [GitHub](https://github.com/Epivitae/WinMan) [DOI](https://doi.org/10.5281/zenodo.18224551) |
6 changes: 3 additions & 3 deletions _pages/plugins/biosensor/fia.md
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Expand Up @@ -15,7 +15,8 @@ team-maintainers: ['@Epivitae']
{%- assign dev-status = page.dev-status -%}
{%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%}

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18206931.svg)](https://doi.org/10.5281/zenodo.18206931)
[![DOI](https://zenodo.org/badge/1131581394.svg)](https://doi.org/10.5281/zenodo.18206931)


**FIA (Fluorescence Image Aligner)** is a robust motion correction plugin designed to solve the full spectrum of motion artifacts in biological time-lapse microscopy.

Expand Down Expand Up @@ -84,9 +85,8 @@ FIA is built upon established computer vision algorithms to ensure reliability:

## Citation & DOI

If you use FIA in your research, please cite the permanent Zenodo record:

Wang, K. (2026). FIA: Fluorescence Image Aligner - Robust Motion Correction for ImageJ/Fiji (v3.1.0). Zenodo. https://doi.org/10.5281/zenodo.18206931
Wang, K. (2026). FIA: Fluorescence Image Aligner - Robust Motion Correction for ImageJ/Fiji. Zenodo. https://doi.org/10.5281/zenodo.18206931

* **Repository**: [https://github.com/Epivitae/FIA-Fluorescence-Image-Aligner](https://github.com/Epivitae/FIA-Fluorescence-Image-Aligner)
* **CNS Team**: [Chimeric Nano Sensor Team](https://www.cns.ac.cn/)
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5 changes: 3 additions & 2 deletions _pages/plugins/biosensor/mia.md
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Expand Up @@ -15,7 +15,8 @@ team-maintainers: ['@Epivitae']
{%- assign dev-status = page.dev-status -%}
{%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%}

[![Release](https://img.shields.io/github/v/release/Epivitae/MIA-Metadata-Inspection-Analyzer?color=blue)](https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer/releases)
[![Release](https://img.shields.io/github/v/release/Epivitae/MIA-Metadata-Inspection-Analyzer?color=blue)](https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer/releases) [![DOI](https://zenodo.org/badge/1136201132.svg)](https://doi.org/10.5281/zenodo.18280807)


**MIA (Metadata Inspection Analyzer)** is a streamlined, user-friendly ImageJ/Fiji plugin designed for instant extraction and visualization of microscopy metadata.

Expand Down Expand Up @@ -55,7 +56,7 @@ MIA is distributed via the **Biosensor Tools** Fiji Update Site.

If you use this software in your research, please cite the software and the repository:

Wang, K. (2026). MIA: Metadata Inspection Analyzer - A Lightweight Metadata Extraction Tool for ImageJ/Fiji (v1.0.0). [Software]. Available at https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer
Wang, K. (2026). MIA: Metadata Inspection Analyzer — A Lightweight Tool for Extracting Microscopy Source Parameters (v1.1.0). Zenodo. https://doi.org/10.5281/zenodo.18280807

* **Repository**: [https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer](https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer)
* **CNS Team**: [Chimeric Nano Sensor Team](https://www.cns.ac.cn/)
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3 changes: 2 additions & 1 deletion _pages/plugins/biosensor/nia.md
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Expand Up @@ -15,7 +15,8 @@ team-maintainers: ['@Epivitae']
{%- assign dev-status = page.dev-status -%}
{%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%}

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18244343.svg)](https://doi.org/10.5281/zenodo.18244343)
[![DOI](https://zenodo.org/badge/1134239045.svg)](https://doi.org/10.5281/zenodo.18244343)


**NIA (Neural Inference Assistant)** is a native, AI-powered denoising plugin that brings deep learning to ImageJ/Fiji without the configuration headache.

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3 changes: 2 additions & 1 deletion _pages/plugins/biosensor/ria-j.md
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Expand Up @@ -15,7 +15,8 @@ team-maintainers: ['@Epivitae']
{%- assign dev-status = page.dev-status -%}
{%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%}

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18204761.svg)](https://doi.org/10.5281/zenodo.18204761)
[![DOI](https://zenodo.org/badge/1131155665.svg)](https://doi.org/10.5281/zenodo.18200077)


**RIA-J (Ratio Imaging Analyzer - Java Edition)** is a lightweight, high-performance ImageJ/Fiji plugin designed for interactive ratiometric fluorescence analysis.

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3 changes: 2 additions & 1 deletion _pages/plugins/biosensor/winman.md
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Expand Up @@ -15,7 +15,8 @@ team-maintainers: ['@Epivitae']
{%- assign dev-status = page.dev-status -%}
{%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%}

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18224551.svg)](https://doi.org/10.5281/zenodo.18224551)
[![DOI](https://zenodo.org/badge/1132898127.svg)](https://doi.org/10.5281/zenodo.18224551)


**WinMan (Window Manager & Workflow Accelerator)** is a lightweight utility designed to solve the "Desktop Explosion" problem in high-throughput microscopy workflows.

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