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Update of compMRS_DPproc and subfunctions#12

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tpkle wants to merge 9 commits intojamienear:mainfrom
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Open

Update of compMRS_DPproc and subfunctions#12
tpkle wants to merge 9 commits intojamienear:mainfrom
tpkle:main

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@tpkle
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@tpkle tpkle commented Jan 9, 2026

Most DPs can be processed now with some issues with the phase. For some DPs, there are some subjects where the output spectrum looks really bad. We should check whether it is a data or processing issue.

tpkle added 8 commits January 7, 2026 20:59
Output the number of points to be leftshifted to fix the 1st order phase distortion.
Update compMRS_parseBrukerFormat.m to properly read refscans in method file.
Update compMRS_loadspecBruker.m to get the group delay in all cases (either acqp or acqus files, and from parameter GRPDLY or ACQ_RxFilterInfo). We no longer perform leftshift in compMRS_loadspecBruker; this will be done in compMRS_DPproc.m
compMRS_DPload is modified to make it compatible with DP36 (no separate refscan, only automatic refscan).
Update of compMRS_DPproc. Most DPs can be processed. There are still issues with SPECIAL acquisitions on Bruker systems. The first-order phase correction in case of a non-integer of left-shifted points still has to be checked.
New compMRS_runDPproc_onAllDP.m script to process all DPs at once.
All datasets can be processed now (there are still some phasing issues), except DP22 and DP23 (different sequence, and how data are arranged).
There are still few phasing issues. Most DPs can be phased using op_autophase at the end, but for some datasets (DP 06, 07, 08, 36), the result is better without autophase. There are several issues with DP17, and the SNR seems very poor.
@markmikkelsen
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FAO @DianaaRotaru

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