Courses

Asian School of the Environment, Nanyang Technological University, Singapore

See NTU courses

Tutorials

R

• R introduction
• Phyloseq
• Plotting culture data

Metabarcoding

• Metabarcoding analysis with dada2
• Compare analysis with mothur vs. dada2

Metabarcoding

BIOSOPE 2013

• 03 - Sequence processing
• 04 - Mothur vs Dada2
• 05 - BLAST

NZ 2017

• 06 - Create phyloseq
• 07 - BLAST
• 08 - Phyloseq examples

Singapore

• Phyloseq analysis
• Eukaryote synthesis
• Eukaryote analysis 97%
• Eukaryote analysis 98%
• Eukaryote analysis ASV dada2

Antarctica 2015 - Sorted samples

• Dada2

Cruises

• Ilhas cruises 1 and 2 - Brazil 2017
• Green Edge - 2015-2016 - Ice Camp

Metagenomes

• Subrata fish metagenomes - 2018

Databases

RCC

• RCC statistics
• RCC extract data
• Submit sequences to Genbank
• Submit sequences to Genbank - pdf version

Papers

• Distribution of Bolidophyceae
• Distribution of Malina RCC2288
• Distribution of Chlorophyta at OSD stations
• Distribution of Mamiellophyceae at OSD stations