GitHub - kpatel427/R-scripts: Miscellaneous R script to wrangle data and generate visualizations

Description

Placeholder for miscellaneous R scripts to wrangle and visualize data. Also contains various scripts to generate different types of plots.

Name		Name	Last commit message	Last commit date
Latest commit History 93 Commits
GSEA.R		GSEA.R
Iterative.r		Iterative.r
MYCN_correlation.R		MYCN_correlation.R
README.md		README.md
SEQC_GEO.R		SEQC_GEO.R
WDI-1.R		WDI-1.R
WDI_2.R		WDI_2.R
WDI_3.R		WDI_3.R
analyzeMAST.R		analyzeMAST.R
annoColorPheatmap.R		annoColorPheatmap.R
correlation-dna-rna-vaf.R		correlation-dna-rna-vaf.R
defineScalePheatmap.R		defineScalePheatmap.R
exomeDepth.R		exomeDepth.R
extendPalette.R		extendPalette.R
extract-dates.R		extract-dates.R
fixGeneSymb.R		fixGeneSymb.R
geneExprCorr.R		geneExprCorr.R
geneSymbol_geneCoordinates_biomaRT.R		geneSymbol_geneCoordinates_biomaRT.R
getData.R		getData.R
getOrthologs.R		getOrthologs.R
gffDatawrangling.R		gffDatawrangling.R
ggplot_facetPagination.R		ggplot_facetPagination.R
heatmap.R		heatmap.R
hydridBarLinePlot.R		hydridBarLinePlot.R
linearRegression.R		linearRegression.R
motif2meme.R		motif2meme.R
nestedDonught.R		nestedDonught.R
normalizeValues.R		normalizeValues.R
oncoprintMAST.R		oncoprintMAST.R
overlay_distributions.R		overlay_distributions.R
pairwiseComparisons.R		pairwiseComparisons.R
plotCopyNumberCalls.R		plotCopyNumberCalls.R
plotCopyNumberCallsMDX.R		plotCopyNumberCallsMDX.R
plotCorrelation.R		plotCorrelation.R
plotPheatmap.R		plotPheatmap.R
plot_code.R		plot_code.R
plotly_doughnutplot.R		plotly_doughnutplot.R
region_to_cytoband.sh		region_to_cytoband.sh
scatter3D.R		scatter3D.R
sigVal_allAmpPeaks.R		sigVal_allAmpPeaks.R
survKMplot.R		survKMplot.R
survivalAnalysis.R		survivalAnalysis.R
vennDiagram.R		vennDiagram.R
volcano-plot.R		volcano-plot.R