seqkit_scripts

Shell scripts for working with genome sequence data, drawing primarily on the awesome SeqKit toolkit.

Requirements

• SeqKit
• Gnu Parallel

The above are all easily installed via Conda. Also assumes your system has the standard Unix toolchain such as sort and awk.

Installation

Simply put these script in your PATH as you would any other shell scripts:

• Download this repo to your system (e.g. ~/gits/seqkit_scripts)

• Add the repo location to your path (e.g. export PATH=$PATH:$HOME/gits/seqkit_scripts or add it to your shell profile)