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@metagenopolis

metagenopolis

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  1. CroCoDeEL CroCoDeEL Public

    CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data

    Python 24

  2. meteor meteor Public

    Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes)…

    Python 29 2

  3. ESKRIM ESKRIM Public

    ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers

    Python 5

Repositories

Showing 7 of 7 repositories
  • ASAP_human Public
    metagenopolis/ASAP_human’s past year of commit activity
    R 0 0 0 0 Updated Nov 28, 2025
  • meteor Public

    Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes), functional analysis and strain-level population structure inference.

    metagenopolis/meteor’s past year of commit activity
    Python 29 GPL-3.0 2 10 1 Updated Nov 19, 2025
  • NeighborFinder Public

    NeighborFinder is an R package enabling the identification of the local neighborhood of a species of interest, based on microbiome data.

    metagenopolis/NeighborFinder’s past year of commit activity
    R 0 LGPL-3.0 0 0 0 Updated Sep 25, 2025
  • CroCoDeEL_auxillary Public

    CroCoDeEL auxillary scripts and workflows

    metagenopolis/CroCoDeEL_auxillary’s past year of commit activity
    Nextflow 0 1 0 0 Updated Aug 14, 2025
  • CroCoDeEL Public

    CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data

    metagenopolis/CroCoDeEL’s past year of commit activity
    Python 24 GPL-3.0 0 1 0 Updated Aug 8, 2025
  • OneNet Public

    OneNet is a stability based network inference aggregation method from whole metagenome sequencing data, which aims at fostering reproducibility and precision

    metagenopolis/OneNet’s past year of commit activity
    R 1 MIT 0 0 0 Updated Dec 17, 2024
  • ESKRIM Public

    ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers

    metagenopolis/ESKRIM’s past year of commit activity
    Python 5 GPL-3.0 0 0 0 Updated Jul 25, 2024

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