Update the mode decription, added 'hasValue = false' to options that…#2
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paulgallagher75 wants to merge 7 commits intomichalszynkiewicz:pig-to-baconfrom
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Update to javadoc
… require no value like most of the skip options, added a deprecated check in javadoc for yaml usage of customPmeParameters everyone should use alignmentParameters
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… require no value like most of the skip options, added a deprecated check in javadoc for yaml usage of customPmeParameters everyone should use alignmentParameters