RHR - Updates to Nextflow code#194

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bnovak32 wants to merge 9 commits intonasa:DEV_Metagenomics_rmHR_NF_conversionfrom

bnovak32:DEV_Metagenomics_rmHR_NF_conversion

Commits on Feb 13, 2026

Updates to Nextflow code
bnovak32
committed

Commits on Mar 4, 2026

Implement protocol generation and update host reference handling in Nextflow workflow
jihanyehia
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Update workflow documentation to reflect changes
jihanyehia
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Remove legacy code from GENERATE_PROTOCOL process
jihanyehia
committed

Commits on Mar 5, 2026

Add description to added params in nextflow_schema.json
jihanyehia
committed

Commits on Mar 13, 2026

Update README links and add reference database documentation; modify hosts.csv and main.nf for improved workflow handling
jihanyehia
committed

Commits on Mar 17, 2026