Overview

This is a tool for graphing French public health autorities hospital data.

• réa and dc graphs: moving averages (7 days, centered),
  ICU admissions and daily deaths respectively

• grey line subliminal dots: 25% of usual daily all causes mortality,
  for département or zone (insee detailled data 2018+2019, monthly averages)

• red lines: «exponential» regressions on chunks of dc, red balls indicate doubling time (or divide-by-two time), above line when increasing, below line when decreasing

• green lines: «exponential» regressions on chunks of réa,
  green balls indicate doubling or divide-by-two time

data: Santé Publique France > data.gouv.fr > nouveaux-covid19.csv

Daily graphs

http://coviiid.free.fr

Usage

$ ./graphit.py -h
usage: graphit.py [-h] [--zoom-1-100] [--two-months] [--full] [--episode-1]
                  [--fouché] [--pred] [--noise] [--round] [--week] [--hills]
                  [--log-scale] [--style <style>] [--noshow]
                  arg [arg ...]

positional arguments:
  arg              dept [dept ...] or region
                   (pc|gc|idf|paca|sud|ra|auv|ara|bfc|fc|ge|met)

optional arguments:
  -h, --help       show this help message and exit
  --zoom-1-100     graph using 1-100 y scale [default is 1-50]
  --two-months     graph last two months
  --full           graph full history from day one
  --episode-1      graph Episode I time window
  --fouché         graph Fouché-fixed réa (5/8)
  --pred           graph predictor
  --noise          show mortality noise level
  --round          show rounded values graphs
  --week           show weekly average graph
  --hills          show dc as hills instead of bars
  --log-scale      use logarithmic y-scale for graphs
  --style <style>  use <style> instead of xkcd [try: fast]
  --noshow         don't display graph on screen

Installing

sudo apt-get install python3-tk

mkvirtualenv python=`which python3`

pip install -r requirements.txt

Running

./fetch.sh
./graphit.py

./graphit.py idf
./graphit.py 13
./graphit.py 69 38

./graphit.py met --full
./graphit.py met --two-months --noise
./graphit.py met --episode-1
./graphit.py met --style seaborn

Installing an xkcd-style font

make xkcd.ttf clean

Note: the usual xkcd-like font is Humor-Sans, but it has no latin glyphs.