Sync: BioPortal v6.8.0 release #18
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…gies_api into feature/user-admin-endpoints
Feature: Ontology Admin Endpoints for Logs and Submission Management
…ests Replace non-idiomatic assertions with Minitest equivalents: - assert(x == y) -> assert_equal - .eql?() -> assert_equal - assert !x.empty? -> assert_operator x.length, :>, 0 - submissions.all? -> submissions.each for better error messages Extract repeated contact validation into helper method to reduce duplication. Fix intermittent test failures by sorting array keys before comparison to handle non-deterministic ordering. refs #197
- Replace class variables (@@) with class instance variables using accessors - Add attr_accessor definitions for shared test state - Modernize assertions to Minitest style (assert_equal, assert_includes, assert_nil) - Improve code formatting and readability
…dition - Replace random .sample(3) with deterministic .first(3) - Use dynamic assertion for keep_ids count instead of hardcoded value - Capture process_id before use for clarity - Simplify polling loop condition to check only for 'done' or 'errors' - Clean up assertion message formatting for consistency
…n/deletion - Replace `assert 201, ...` with `assert_equal 201, ...` to properly compare response status. - Add GET checks after slice creation to confirm the new slice exists. - Remove redundant manual reset of LinkedData.settings.enable_security. - Update DELETE test to expect 204 (No Content) instead of 201. - Add GET checks after deletion to verify the slice was actually removed.
- Add explicit flunk when status_payload contains 'errors' to prevent false positives from incomplete or invalid responses - Ensure test fails immediately on backend error instead of silently skipping assertions
Restore LinkedData.settings.enable_slices to its original value after tests.
…com:ncbo/ontologies_api into refactor/tests-stability-and-minitest-style
… user helpers This change refactors `TestOntologySubmissionsController` to eliminate suite-level globals and class-variable state in favor of per-test setup and shared helpers: - Replace `before_suite` + `@@acronym`/`@@name`/`@@file_params` with per-test `setup` that generates a unique ontology acronym and creates an ontology administered by a shared test user. - Introduce a suite-local `USERNAME = "test_user"` and use `ensure_user(USERNAME)` to guarantee the user exists without races. - Normalize assertion style: - Use `assert_equal(expected, actual, message)` with parentheses - Remove `msg=` pseudo-named args - Add `.sort` where appropriate when comparing unordered keys - Replace direct references to `@@acronym`/`@@name` with instance vars (`@acronym`, `@name`). New helper methods (in the base test class) used by this suite: - `create_user(username, email:, password:)` — always creates a user - `ensure_user(username, email:, password:)` — idempotently finds or creates - `delete_user(username)` — removes a user if present Notes: - `delete_ontologies_and_submissions` now runs in `setup` to guarantee a clean slate per test. `after_all` also cleans up the shared user via `delete_user(USERNAME)`. If the extra cleanup proves redundant, we can drop `before_all`/`after_all` and keep only the per-test cleanup.
…st-style Refactor/tests stability and minitest style
Feature/user admin endpoints - fix unit tests and stability after merging feature branch
Develop -> Master merge, release v6.8.0
Refactor deployment workflow: safer permissions, better triggers, and concurrency lock - use minimal token permissions - Auto-deploy only from develop - global concurrency lock - Improve BRANCH/TARGET logic - Add deployment detail output
Develop -> Master merge, release v6.8.1
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Sync BioPortal v6.8.0 release