Feature: Add all MOD metadata feilds to the submission object

[syphax-bouazzouni]

Changes

• Add ontology submission metadata scheme file (4703544)
• Add all MOD metadata to the submission model (0e56795)

Property Name	Label	Type	Namespace	Required	Help Text
submissionId	Submission ID	integer	-	Yes	Unique identifier for the ontology submission.
prefLabelProperty	Object preferred label property	uri	skos	No	Property used to specify objects preferred label.
definitionProperty	Object definition property	uri	skos	No	Property used to specify objects definition.
synonymProperty	Object synonym property	uri	skos	No	Property used to specify objects synonyms.
authorProperty	Object author property	uri	dc	No	Property used to specify object author.
classType	Class Type	uri	-	No	The type of the class in the ontology.
hierarchyProperty	Hierarchy property	uri	-	No	A property that is used to specify the hierarchy.
obsoleteProperty	Object obsolete property	uri	owl	No	Property used to specify obsolete objects.
obsoleteParent	Obsolete Parent	uri	-	No	The parent class for obsolete terms.
createdProperty	Object creation date property	uri	dc	No	Property used to specify the date of creation of a class or another object.
modifiedProperty	Object modification date property	uri	dc	No	Property used to specify the date of modification of a class or another object.
uri	URI	uri	omv	No	The URI of the ontology which is described by these metadata.
versionIRI	Version IRI	uri	owl	No	The property that identifies the version IRI of an ontology.
version	Version information	string	omv	No	The version information of the ontology.
status	Status	string	omv	No	The status of the current version of the ontology (alpha, beta, production, retired).
deprecated	Deprecated	boolean	owl	No	Indicates if a given entity has been deprecated.
hasOntologyLanguage	Representation language	ontology_format	omv	Yes	The ontology language.
hasFormalityLevel	Formality level	uri	omv	No	Level of formality of the ontology.
hasOntologySyntax	Syntax	uri	omv	No	The presentation syntax for the ontology language.
naturalLanguage	Natural language	list	omv	No	The language of the content of the ontology.
isOfType	Generic type	uri	omv	No	The nature of the content of the ontology.
identifier	Other identifier	list, uri	dct	No	An unambiguous reference to the resource within a given context.
description	Description	string	omv	No	Free text description of an ontology.
homepage	Homepage	uri	foaf	No	Ontology homepage.
documentation	Documentation	uri	omv	No	URL for further documentation.
notes	Notes	list	omv	No	Additional information about the ontology.
keywords	Keywords	list	omv	No	List of keywords related to an ontology.
hiddenLabel	Hidden label	list	skos	No	A lexical label for a resource that should be hidden.
alternative	Alternative name	list	dct	No	An alternative name for the resource.
abstract	Abstract	string	dct	No	A summary or abstract of the ontology.
publication	Bibliographic reference	list, uri	-	No	List of bibliographic references describing the ontology.
accrualMethod	Accrual method	list	dct	No	Method by which items are added to the ontology.
accrualPeriodicity	Accrual periodicity	string	dct	No	Frequency with which items are added.
accrualPolicy	Accrual policy	string	dct	No	Policy governing the addition of items.
competencyQuestion	Competency question	list	mod	No	Questions used to build the ontology at design time.
wasGeneratedBy	Was generated by	list	prov	No	The process that generated this ontology.
wasInvalidatedBy	Was invalidated by	list	prov	No	The process that invalidated this ontology.
includedInDataCatalog	Indexed in catalog	list, uri	schema	No	Catalogs where this ontology is included.
hasPriorVersion	Prior version	uri	omv	No	Reference to an earlier version.
hasPart	Has part	list, uri	dct	No	Related resources included in this ontology.
ontologyRelatedTo	Generally related to	list, uri	door	No	Ontology that is related to another.
similarTo	Similar to	list, uri	door	No	Ontology that is similar to another.
comesFromTheSameDomain	Comes from the same domain	list, uri	door	No	Ontology from the same domain.
isAlignedTo	Has equivalences with	list, uri	door	No	Indicates alignment with another ontology.
isBackwardCompatibleWith	Backward compatible	list, uri	omv	No	Indicates compatibility with a previous version.
isIncompatibleWith	Incompatible	list, uri	omv	No	Indicates incompatibility with a previous version.
hasDisparateModelling	Has disparate modelling	list, uri	door	No	Indicates ontologies with different modelling approaches.
hasDisjunctionsWith	Has disjunctions with	list, uri	voaf	No	Indicates ontologies with logical disjunctions.
generalizes	Generalizes	list, uri	voaf	No	Indicates that the ontology generalizes another ontology.
explanationEvolution	Specializes	list, uri	door	No	Indicates a specialization of another ontology.
useImports	Imports	list, uri	omv	No	Ontologies that this ontology imports.
usedBy	Used by	list, uri	voaf	No	Ontologies that use this ontology.
workTranslation	Work translation	list, uri	schema	No	Translations of the ontology.
translationOfWork	Translation of work	list, uri	schema	No	The original work from which this is a translation.

[syphax-bouazzouni]

should be downcase

[alexskr]

addressed in ncbo@fe9c6f4

[syphax-bouazzouni]

need to be updated to not use "http://lexvo.org/id/iso639-1/'

[alexskr]

addressed in ncbo@fe9c6f4

[alexskr]

the data type of publication attribute is changed to a list. This requires updating the UI to accommodate this change

[alexskr]

addressed in ncbo/bioportal_web_ui@2447a8a

[alexskr]

submission_validators lacks unit test