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@jmjuanes jmjuanes marked this pull request as draft September 15, 2025 16:09
jmjuanes and others added 28 commits November 5, 2025 14:31
…n clinical-preprocessing #TASK-7977 #TASK-7645
@pfurio pfurio requested a review from Copilot December 18, 2025 13:18
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Pull request overview

This PR implements variant review and summary features for clinical analysis, including new components for reviewing variants with evidence support, managing clinical reports, and uploading multiple files. Key changes involve enhanced data forms with improved list rendering, new file management capabilities, and comprehensive variant review workflows.

Key Changes:

  • Added clinical variant review and evidence management components
  • Implemented clinical report generation with template support and preview
  • Enhanced file upload functionality with multiple file support
  • Improved data-form component with better list/table rendering and object-list editing

Reviewed changes

Copilot reviewed 106 out of 175 changed files in this pull request and generated 4 comments.

Show a summary per file
File Description
src/webcomponents/clinical/variant/clinical-variant-review.js New component for reviewing variants with evidence selection, ACMG classification, and discussion
src/webcomponents/clinical/variant/clinical-variant-evidences-grid.js Grid component for displaying and reviewing variant evidences with transcript filtering
src/webcomponents/clinical/report/clinical-report-review.js Component for reviewing clinical reports with variant cards and signature management
src/webcomponents/clinical/report/clinical-report-preview.js Preview component for clinical reports with live template editing
src/webcomponents/file/file-upload-multiple.js New component enabling upload of multiple files with status tracking
src/webcomponents/file/file-editor.js File content editor with syntax highlighting and theme support
src/webcomponents/commons/forms/data-form.js Enhanced with improved list rendering, table formatting, and object-list editing
src/webcomponents/commons/image-loader.js New component for uploading and managing images
src/webcomponents/commons/filters/pubmed-search.js PubMed search integration for finding references
src/webcomponents/commons/content-editor.js Text editor with syntax highlighting using mokai library

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@gpveronica gpveronica self-requested a review December 18, 2025 18:29
gpveronica
gpveronica previously approved these changes Dec 18, 2025
gpveronica
gpveronica previously approved these changes Dec 22, 2025
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sonarqubecloud bot commented Jan 7, 2026

Quality Gate Failed Quality Gate failed

Failed conditions
3 Security Hotspots
8.7% Duplication on New Code (required ≤ 3%)
C Reliability Rating on New Code (required ≥ A)

See analysis details on SonarQube Cloud

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4 participants