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50 repositories

kitsune
Public
Kitsune is a next-generation data steward and harmonization tool.
embeddings data-harmonization semantic-mapping
embeddings data-harmonization semantic-mapping data-stewardship large-language-models
TypeScript
•
Apache License 2.0
•1•3•9•2•Updated Apr 24, 2026Apr 24, 2026
internal-mcp-server
Public
Python
•
Apache License 2.0
•0•0•0•3•Updated Apr 24, 2026Apr 24, 2026
PDataViewer
Public
Parkinsons Disease cohort landscape visualization
visualization parkinsons-disease cohort-selection
visualization parkinsons-disease cohort-selection common-data-model
TypeScript
•
Apache License 2.0
•0•3•4•1•Updated Apr 23, 2026Apr 23, 2026
datastew
Public
Python library for intelligent data stewardship using Large Language Model (LLM) embeddings
data-harmonization data-stewardship large-language-models
data-harmonization data-stewardship large-language-models
Python
•
Apache License 2.0
•0•6•7•1•Updated Apr 21, 2026Apr 21, 2026
psychstrata-dashboard
Public
Treatment Resistance (TR) Prediction Dashboard
dashboard mdd
dashboard mdd
Python
•
Apache License 2.0
•1•1•3•0•Updated Apr 21, 2026Apr 21, 2026
covid-NDD-comorbidity-NLP
Public
This work aims to integrate diverse, curated biological databases with a comprehensive analysis of the growing body of literature on the potential long-term ne…
Jupyter Notebook
•0•4•0•0•Updated Apr 17, 2026Apr 17, 2026
syndat
Public
Synthetic data quality evaluation & visualization
data-visualization data-quality synthetic-data
data-visualization data-quality synthetic-data
Python
•
MIT License
•0•4•8•0•Updated Apr 15, 2026Apr 15, 2026
ADHTEB
Public
ADHTEB - Alzheimers Disease Harmonization Text Embedding Benchmark
benchmark alzheimers-disease data-harmonization
benchmark alzheimers-disease data-harmonization llms
Python
•
Apache License 2.0
•0•5•2•0•Updated Apr 14, 2026Apr 14, 2026
primekg-rag
Public
RAG-based method for mapping variables to PrimeKG subgraphs with textual graph descriptions.
knowledge-graph rag llm
knowledge-graph rag llm primekg graph-retrieval
Python
•
Apache License 2.0
•0•2•0•0•Updated Mar 11, 2026Mar 11, 2026
tau-kg-extension-nlp
Public
Extending the Tau subgraph within the pharmacome using NLP.
Jupyter Notebook
•0•0•0•0•Updated Mar 6, 2026Mar 6, 2026
pytmle
Public
A Flexible Python Implementation of Targeted Estimation for Survival and Competing Risks Analysis
Python
•
Apache License 2.0
•1•2•0•1•Updated Feb 19, 2026Feb 19, 2026
commute-tmle
Public
Code accompanying the paper "Is COVID-19 increasing the risk for neurodegeneration? A causal inference study on three real-world population cohorts".
Python
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Apache License 2.0
•0•0•0•0•Updated Feb 2, 2026Feb 2, 2026
CGEx
Public
CGEx (Cypher Generating Expert), a system that enables users to interact with a COVID-NDD comorbidity knowledge graph using simple natural language questions. C…
Python
•
Apache License 2.0
•0•0•0•0•Updated Dec 23, 2025Dec 23, 2025
ollama-docker
Public
Pre-build docker containers for different LLMs using Ollama
docker llm ollama
docker llm ollama
Shell
•
Apache License 2.0
•0•1•0•0•Updated Nov 19, 2025Nov 19, 2025
covid-NDD-image-based-information-extraction
Public
Extracting structured knowledge from biomedical images using LLMs, focusing on COVID-19 and neurodegeneration. Leverages GPT-4o for image analysis and semantic …
Jupyter Notebook
•1•0•0•1•Updated Nov 6, 2025Nov 6, 2025
MultiNODEs
Public
Python
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MIT License
•2•8•0•0•Updated Sep 5, 2025Sep 5, 2025
SEEDS
Public
SEEDS (Similarity based Expert Embedding Decision System) is a Retrieval-Augmented Generation (RAG) based agricultural question-answering (QA) system. It is bui…
Python
•
Apache License 2.0
•1•2•0•0•Updated Aug 21, 2025Aug 21, 2025
BiomarkerOntology
Public
The Biomarker Ontology
0•0•1•0•Updated Jul 31, 2025Jul 31, 2025
CBM-Comorbidity-KG
Public
a manually curated, comorbidity-centric knowledge graph linking COVID-19 to neurodegenerative diseases
Cypher
•
Apache License 2.0
•1•0•0•0•Updated Jun 12, 2025Jun 12, 2025
cv-extraction
Public
Web-Tool for LLM based CV extraction
text-mining resume-parser llm
text-mining resume-parser llm
Python
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Apache License 2.0
•0•1•2•0•Updated May 5, 2025May 5, 2025
PD-diagnostic-delay
Public
Parkinson's disease diagnostic delay analysis
0•1•0•0•Updated Mar 31, 2025Mar 31, 2025
radar-ad-rmt-analysis
Public
Python
•0•0•0•0•Updated Mar 26, 2025Mar 26, 2025
causal-npi-effects
Public
A causal machine learning framework to assess effects of non-pharmaceutical interventions on pandemic disease spread.
Python
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Apache License 2.0
•0•0•0•0•Updated Mar 18, 2025Mar 18, 2025
MMPK-SciML
Public
Official implementation of the paper Scientific Machine learning for predicting plasma concentrations in anti-cancer therapy
Python
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MIT License
•0•4•0•0•Updated Mar 11, 2025Mar 11, 2025
psystrata-explainerdashboard
Public
Prototype Dashboard explaining Treatment Resistance Models, based on explainerdashboard
explainable-ai
explainable-ai
Python
•
MIT License
•345•1•0•0•Updated Feb 26, 2025Feb 26, 2025
tsnepad
Public
AD & PD cohort variable distributions
visualization t-sne alzheimers-disease
visualization t-sne alzheimers-disease parkinsons-disease data-harmonization
HTML
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MIT License
•0•2•0•0•Updated Feb 17, 2025Feb 17, 2025
ExMed-BERT
Public
Python
•3•8•0•0•Updated Feb 3, 2025Feb 3, 2025
Dynamic_Ensemble
Public
A Dynamic Ensemble Model for short-term Forecasting in Pandemic Situations
Python
•0•0•0•0•Updated Sep 18, 2024Sep 18, 2024
wasterwater_analysis
Public
Jupyter Notebook
•0•0•0•0•Updated Sep 18, 2024Sep 18, 2024
service-template
Public
0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

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Fraunhofer SCAI Biomedical Data Intelligence Unit

All

All

50 repositories

kitsune

internal-mcp-server

PDataViewer

datastew

psychstrata-dashboard

covid-NDD-comorbidity-NLP

syndat

ADHTEB

primekg-rag

tau-kg-extension-nlp

pytmle

commute-tmle

CGEx

ollama-docker

covid-NDD-image-based-information-extraction

MultiNODEs

SEEDS

BiomarkerOntology

CBM-Comorbidity-KG

cv-extraction

PD-diagnostic-delay

radar-ad-rmt-analysis

causal-npi-effects

MMPK-SciML

psystrata-explainerdashboard

tsnepad

ExMed-BERT

Dynamic_Ensemble

wasterwater_analysis

service-template

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All

Repositories list

50 repositories