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    • Jupyter Notebook
      MIT License
      0128934Updated Mar 21, 2026Mar 21, 2026
    • DeepEM

      Public
      Deep Learning for EM Connectomics
      Python
      MIT License
      12007Updated Mar 19, 2026Mar 19, 2026
    • waterz

      Public
      Simple watershed and agglomeration library for affinity graphs.
      C++
      28000Updated Mar 18, 2026Mar 18, 2026
    • Synaptor

      Public
      Processing voxelwise outputs for Connectomics
      Python
      Other
      5001Updated Mar 14, 2026Mar 14, 2026
    • DataProvider for Python3
      Jupyter Notebook
      MIT License
      6000Updated Mar 12, 2026Mar 12, 2026
    • Augmentor

      Public
      Data augmentation for training 3D convolutional nets
      Jupyter Notebook
      GNU General Public License v3.0
      7001Updated Mar 2, 2026Mar 2, 2026
    • Company webpage
      HTML
      0000Updated Feb 27, 2026Feb 27, 2026
    • Shell
      MIT License
      6000Updated Feb 26, 2026Feb 26, 2026
    • seuron

      Public
      Python
      MIT License
      7010Updated Feb 12, 2026Feb 12, 2026
    • abiss

      Public
      Affinity based image segmentation system
      C++
      GNU General Public License v3.0
      4000Updated Jan 6, 2026Jan 6, 2026
    • mypy

      Public
      Optional static typing for Python
      Python
      Other
      3.2k001Updated Jan 3, 2026Jan 3, 2026
    • malis

      Public
      MALIS structured loss function for supervised learning of segmentation and clustering
      Python
      MIT License
      15000Updated Nov 26, 2025Nov 26, 2025
    • Jupyter Notebook
      0000Updated Nov 2, 2025Nov 2, 2025
    • VS Code Extension for zetta utils CUE specs
      TypeScript
      MIT License
      0040Updated Oct 21, 2025Oct 21, 2025
    • WebGL-based viewer for volumetric data
      TypeScript
      Apache License 2.0
      352001Updated Sep 17, 2025Sep 17, 2025
    • Convert ONNX models to PyTorch.
      Python
      Apache License 2.0
      90000Updated Sep 7, 2025Sep 7, 2025
    • Some happy little volumes
      Python
      Apache License 2.0
      0000Updated Aug 8, 2025Aug 8, 2025
    • metroem

      Public
      Jupyter Notebook
      Apache License 2.0
      2000Updated Jun 17, 2025Jun 17, 2025
    • Chunked graph structure used for human proof-reading in Python
      Python
      Mozilla Public License 2.0
      12000Updated Mar 23, 2025Mar 23, 2025
    • labiss

      Public
      Long-range affinity based image segmentation system
      C++
      GNU General Public License v3.0
      4000Updated Dec 12, 2024Dec 12, 2024
    • lsd

      Public
      🌈
      Python
      MIT License
      42000Updated Apr 22, 2024Apr 22, 2024
    • A simple wrapper around some kombu functionality
      Python
      0010Updated Apr 14, 2024Apr 14, 2024
    • Multiplatform 3D numpy image browser based viewer with voxel painting.
      JavaScript
      GNU Lesser General Public License v2.1
      1000Updated Feb 21, 2024Feb 21, 2024
    • Visualize, share and annotate your large 3D images online
      TypeScript
      GNU Affero General Public License v3.0
      29000Updated Jan 30, 2024Jan 30, 2024
    • Some basic utilities to standardize use of provenance files
      Python
      Apache License 2.0
      0001Updated Dec 27, 2023Dec 27, 2023
    • rigidity

      Public
      Python
      0000Updated Dec 12, 2023Dec 12, 2023
    • chunkflow

      Public
      Compose chunk operators to create pipeline for distributed computation
      Python
      Apache License 2.0
      10000Updated Nov 5, 2023Nov 5, 2023
    • A specification that python filesystems should adhere to.
      Python
      BSD 3-Clause "New" or "Revised" License
      433000Updated Aug 9, 2023Aug 9, 2023
    • igneous

      Public
      Python cloud pipeline for Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Remapping, and more.
      Python
      GNU General Public License v3.0
      23010Updated Jun 30, 2023Jun 30, 2023
    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      Python
      MIT License
      59000Updated Jun 8, 2023Jun 8, 2023