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    56 repositories

    • zetta_utils

      Public
      Jupyter Notebook
      •
      MIT License
      •0•12•89•34•Updated Mar 21, 2026Mar 21, 2026

    • DeepEM

      Public
      Deep Learning for EM Connectomics
      Python
      •
      MIT License
      •12•0•0•7•Updated Mar 19, 2026Mar 19, 2026

    • waterz

      Public
      Simple watershed and agglomeration library for affinity graphs.
      C++
      •28•0•0•0•Updated Mar 18, 2026Mar 18, 2026

    • Synaptor

      Public
      Processing voxelwise outputs for Connectomics
      Python
      •
      Other
      •5•0•0•1•Updated Mar 14, 2026Mar 14, 2026

    • DataProvider3

      Public
      DataProvider for Python3
      Jupyter Notebook
      •
      MIT License
      •6•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • Augmentor

      Public
      Data augmentation for training 3D convolutional nets
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •7•0•0•1•Updated Mar 2, 2026Mar 2, 2026

    • zettaai.github.io

      Public
      Company webpage
      HTML
      •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • CAVEdeployment

      Public
      Shell
      •
      MIT License
      •6•0•0•0•Updated Feb 26, 2026Feb 26, 2026

    • seuron

      Public
      Python
      •
      MIT License
      •7•0•1•0•Updated Feb 12, 2026Feb 12, 2026

    • abiss

      Public
      Affinity based image segmentation system
      C++
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • mypy

      Public
      Optional static typing for Python
      Python
      •
      Other
      •3.2k•0•0•1•Updated Jan 3, 2026Jan 3, 2026

    • malis

      Public
      MALIS structured loss function for supervised learning of segmentation and clustering
      Python
      •
      MIT License
      •15•0•0•0•Updated Nov 26, 2025Nov 26, 2025

    • cave_example_boulanger

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 2, 2025Nov 2, 2025

    • vscode-zutils

      Public
      VS Code Extension for zetta utils CUE specs
      TypeScript
      •
      MIT License
      •0•0•4•0•Updated Oct 21, 2025Oct 21, 2025

    • neuroglancer

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •352•0•0•1•Updated Sep 17, 2025Sep 17, 2025

    • onnx2torch

      Public
      Convert ONNX models to PyTorch.
      Python
      •
      Apache License 2.0
      •90•0•0•0•Updated Sep 7, 2025Sep 7, 2025

    • cirrus-volume

      Public
      Some happy little volumes
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • metroem

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •2•0•0•0•Updated Jun 17, 2025Jun 17, 2025

    • PyChunkedGraph

      Public
      Chunked graph structure used for human proof-reading in Python
      Python
      •
      Mozilla Public License 2.0
      •12•0•0•0•Updated Mar 23, 2025Mar 23, 2025

    • labiss

      Public
      Long-range affinity based image segmentation system
      C++
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • lsd

      Public
      🌈
      Python
      •
      MIT License
      •42•0•0•0•Updated Apr 22, 2024Apr 22, 2024

    • kombu-worker

      Public
      A simple wrapper around some kombu functionality
      Python
      •0•0•1•0•Updated Apr 14, 2024Apr 14, 2024

    • microviewer

      Public
      Multiplatform 3D numpy image browser based viewer with voxel painting.
      JavaScript
      •
      GNU Lesser General Public License v2.1
      •1•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • webknossos

      Public
      Visualize, share and annotate your large 3D images online
      TypeScript
      •
      GNU Affero General Public License v3.0
      •29•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • provenance-toolbox

      Public
      Some basic utilities to standardize use of provenance files
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Dec 27, 2023Dec 27, 2023

    • rigidity

      Public
      Python
      •0•0•0•0•Updated Dec 12, 2023Dec 12, 2023

    • chunkflow

      Public
      Compose chunk operators to create pipeline for distributed computation
      Python
      •
      Apache License 2.0
      •10•0•0•0•Updated Nov 5, 2023Nov 5, 2023

    • filesystem_spec

      Public
      A specification that python filesystems should adhere to.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •433•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • igneous

      Public
      Python cloud pipeline for Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Remapping, and more.
      Python
      •
      GNU General Public License v3.0
      •23•0•1•0•Updated Jun 30, 2023Jun 30, 2023

    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      Python
      •
      MIT License
      •59•0•0•0•Updated Jun 8, 2023Jun 8, 2023