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@cmap Connectivity Map at the Broad Institute

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    36 repositories

    • dockerized_mts

      Public
      R
      •5•7•0•0•Updated Dec 11, 2025Dec 11, 2025

    • cup

      Public
      QC module for Luminex based PRISM data
      Python
      •0•0•0•0•Updated Aug 14, 2024Aug 14, 2024

    • morpheus.js

      Public
      JavaScript matrix visualization and analysis
      visualizationjavascriptchart
      visualizationjavascriptchartstatisticsheatmapmatrix
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •23•70•8•3•Updated Aug 1, 2024Aug 1, 2024

    • slice-reports

      Public
      TypeScript
      •0•0•0•0•Updated May 15, 2024May 15, 2024

    • submission_hub

      Public
      HTML/CSS of new design to be used in clue
      HTML
      •0•0•0•0•Updated Sep 25, 2023Sep 25, 2023

    • panel

      Public
      QC app implemented in panel
      Jupyter Notebook
      •0•0•0•0•Updated Aug 29, 2023Aug 29, 2023

    • prism_lumitracker

      Public
      Updated version of lumitracker qc figure generation for PRISM
      Python
      •0•0•0•0•Updated Apr 11, 2023Apr 11, 2023

    • ctg

      Public
      Sync and sort data for use with the CTG app
      Python
      •0•0•0•0•Updated Feb 17, 2023Feb 17, 2023

    • demo-portal-logn

      Public
      Vue
      •0•0•0•0•Updated Jan 24, 2023Jan 24, 2023

    • merino

      Public
      Pre-publication data flow for PRISM multiplex cell viability assay
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•4•0•Updated Aug 24, 2022Aug 24, 2022

    • cmapPy

      Public
      Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
      genegeneticspandas
      genegeneticspandasgctgctxgrp
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •76•140•21•0•Updated Jul 19, 2022Jul 19, 2022

    • cmapBQ

      Public
      Python
      •
      MIT License
      •4•7•3•0•Updated Mar 1, 2022Mar 1, 2022

    • CTG_pipeline

      Public archive
      R
      •0•1•0•0•Updated Dec 17, 2021Dec 17, 2021

    • cmapM

      Public
      Connectivity Map analysis in MATLAB
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •18•48•5•0•Updated Dec 10, 2021Dec 10, 2021

    • CTE

      Public
      What the Package Does (One Line, Title Case)
      HTML
      •
      Other
      •1•0•0•0•Updated Nov 15, 2021Nov 15, 2021

    • lincs-cell-painting

      Public
      Processed Cell Painting Data for the LINCS Drug Repurposing Project
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •14•0•0•0•Updated Oct 27, 2021Oct 27, 2021

    • cmapR

      Public
      Tools for manipulating annotated data matrices
      bioinformaticsbioconductorcmap
      bioinformaticsbioconductorcmap
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •36•93•11•0•Updated Oct 13, 2021Oct 13, 2021

    • lincs-workshop-2020

      Public
      CMap Notebooks for LINCS 2020 Workshop
      Jupyter Notebook
      •23•49•1•0•Updated Sep 23, 2021Sep 23, 2021

    • cmap-sig-tools

      Public
      Reference documentation and usage notes for core CMap tools.
      Shell
      •0•1•3•0•Updated Jan 5, 2021Jan 5, 2021

    • psp

      Public
      Python scripts for data processing and analysis of P100 and GCP data
      pythonproteomicscmappy
      pythonproteomicscmappy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•10•4•0•Updated Dec 23, 2020Dec 23, 2020

    • deconv

      Public
      Repo for paper: "Improving Deconvolution Methods in Biology"
      R
      •0•0•0•0•Updated Nov 3, 2020Nov 3, 2020

    • morpheus.R

      Public
      R interface to morpheus.js heatmap widget
      visualizationjavascriptchart
      visualizationjavascriptchartrheatmap
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •14•40•7•0•Updated Oct 22, 2020Oct 22, 2020

    • gene_deconvolution_challenge

      Public
      Source code for the top finishers from the CMap Gene Deconvolution challenge
      Python
      •1•0•0•0•Updated Oct 22, 2020Oct 22, 2020

    • mts_biomarker

      Public
      R
      •0•0•0•0•Updated Oct 14, 2020Oct 14, 2020

    • pestle_tools

      Public
      SigTools in Python
      Python
      •1•0•0•0•Updated May 11, 2020May 11, 2020

    • sig_xicon

      Public
      sig_xicon jobs on aws batch
      JavaScript
      •0•0•0•0•Updated Feb 14, 2020Feb 14, 2020

    • morpheus-export

      Public
      export static heat maps using Morpheus.js
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•0•Updated Nov 14, 2019Nov 14, 2019

    • jupyterhub

      Public
      HTML
      •0•0•0•0•Updated Nov 13, 2019Nov 13, 2019

    • cmap_notebooks

      Public
      CMAP public jupyter notebooks
      Jupyter Notebook
      •1•0•0•0•Updated Nov 13, 2019Nov 13, 2019

    • GCT2BQ

      Public
      JavaScript
      •0•0•0•0•Updated Sep 14, 2019Sep 14, 2019