Added Calibration Support, Nonlinear Smoothing Path, and Fly Dataset

data/fly/calibration.toml

@@ -0,0 +1,27 @@
+[cam_0]
+name = "Cam-A"
+size = [ 832, 632,]
+matrix = [ [ 20003.023008090135, 0.0, 416.0,], [ 0.0, 20003.023008090135, 316.0,], [ 0.0, 0.0, 1.0,],]
+distortions = [ -58.1898806599525, 0.0, 0.0, 0.0, 0.0,]
+rotation = [ -0.27221844817360985, 0.6525954351124643, 0.06007236378908297,]
+translation = [ -1.2882079512493625, -1.0604344484725183, 54.050719886340794,]
+
+[cam_1]
+name = "Cam-B"
+size = [ 832, 632,]
+matrix = [ [ 37108.38819953355, 0.0, 416.0,], [ 0.0, 37108.38819953355, 316.0,], [ 0.0, 0.0, 1.0,],]
+distortions = [ 20.68372493071476, 0.0, 0.0, 0.0, 0.0,]
+rotation = [ 0.0324166581697861, 0.23599022611828532, -0.14139832999829952,]
+translation = [ 0.22899704644447338, -0.4534793179025531, 137.52668448420522,]
+
+[cam_2]
+name = "Cam-C"
+size = [ 832, 632,]
+matrix = [ [ 136330.25013473458, 0.0, 416.0,], [ 0.0, 136330.25013473458, 316.0,], [ 0.0, 0.0, 1.0,],]
+distortions = [ -6468.60716369641, 0.0, 0.0, 0.0, 0.0,]
+rotation = [ -0.049241887620683863, -0.5345749549515416, -0.4359283486661547,]
+translation = [ 3.1508636966009713, -1.1159878204030051, 272.2815032187629,]
+
+[metadata]
+adjusted = true
+error = 2.105956142962366

eks/command_line_args.py

@@ -80,6 +80,7 @@ def handle_parse_args(script_type):
         add_s(parser)
         add_inflate_vars(parser)
         add_n_latent(parser)
+        add_calibration(parser)
     elif script_type == 'ibl_pupil':
         add_diameter_s(parser)
         add_com_s(parser)
@@ -218,3 +219,13 @@ def add_n_latent(parser):
         type=int,
     )
     return parser
+
+
+def add_calibration(parser):
+    parser.add_argument(
+        '--calibration',
+        help='file path for calibration.toml file',
+        default=None,
+        type=str,
+    )
+    return parser