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@nsheff nsheff commented Aug 17, 2020

Awhile ago I ran into an issue using looper in an environment that wasn't running on bash.

This solved the problem. I'm not sure this is what we should do, but wanted to document that if the shell isn't bash, then the config files can't use bash constructs... so we may want to think of a systematic way to handle this.

  • wait for divvy 0.7.0 (which chmod +x the written script)

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codecov bot commented Aug 17, 2020

Codecov Report

Merging #282 into dev will not change coverage.
The diff coverage is 0.00%.

Impacted file tree graph

@@           Coverage Diff           @@
##              dev     #282   +/-   ##
=======================================
  Coverage   18.06%   18.06%           
=======================================
  Files          32       32           
  Lines        4040     4040           
=======================================
  Hits          730      730           
  Misses       3310     3310           
Impacted Files Coverage Δ
looper/conductor.py 15.72% <0.00%> (ø)

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@nsheff
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nsheff commented Aug 20, 2020

See #280

Base automatically changed from dev to master August 26, 2020 12:58
@nsheff nsheff changed the base branch from master to dev March 17, 2021 20:17
@donaldcampbelljr
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Is this PR still relevant?

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nsheff commented Sep 23, 2025

Yes, see refgenie/refgenomes.databio.org#4

so it comes up occasionally. I think I never found a really satisfying answer to it...

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3 participants